Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq243 262 4e-65 seq2 156 5e-33 >seq243 Length=19219 Score = 262 bits (290), Expect = 4e-65 Identities = 611/910 (67%), Gaps = 35/910 (4%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| ||||||||| || |||| |||||||||||||||| ||||| || | Sbjct 8821 CATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGC 8880 Query 92850 CAAAGATATCGAATTCACT---AGTGATTGGATTCTTGGCGTTATAATACTTT----TCA 92902 |||||| || | ||| | | | |||||| | | || || |||||| | | Sbjct 8881 CAAAGAAAT-GTTTTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTTCTTGTTA 8938 Query 92903 CCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962 || | | | |||| ||||||||||| || ||||| ||||| ||| ||||||| | | Sbjct 8939 CCTA---AGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTA 8995 Query 92963 CAATTCATTCCTAGAA--GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTA 93020 || ||||| || | | ||| || || ||||| ||||| ||| | |||||||| | Sbjct 8996 CAGTTCATACCCAACAAGGAC--ACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACAT 9053 Query 93021 CAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGG---TGGTTTTTGTACGACAT 93077 |||| ||||| | | |||| | || | | | ||| |||| | | | | || Sbjct 9054 CAACAGCTTCAGTAATAATTTTTTCAAC---AATCTCTGGAGATGGTCTGTTTTGCAAAT 9110 Query 93078 AATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCAT 93137 | ||| ||| || |||||||| || ||||||||||| |||| | |||||||| | Sbjct 9111 GAGCAAACAATAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGT 9170 Query 93138 TGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAAC 93197 | ||| || || ||||| | | |||| || || | ||| || || |||||||| Sbjct 9171 TTGAGAAAGTCAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATG 9230 Query 93198 TACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG 93257 |||| ||| || |||||||| || || ||||| || || | | ||| || | | Sbjct 9231 AACCACTAAAGAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGG 9290 Query 93258 CGGAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | || | | || |||||||| | |||||| || ||||| || | |||||| || | Sbjct 9291 CTTCATCA-TCTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATA 9349 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 | | || || ||||||| |||||| || | | |||| |||||| || || ||| Sbjct 9350 TTGGCAATGGCATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATT 9409 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || | ||| || |||| ||||| | || ||||| |||||||| |||||||| || Sbjct 9410 AATAAAGAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGAT 9469 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||||| | | || ||||| || || | || | | |||||| || ||| Sbjct 9470 TTGGCTTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATA 9529 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT----ATAAAATGTTTCTCATCATC 93552 ||||| || || || ||||| ||||||| || | | ||||| | | |||| || Sbjct 9530 CCATCAGAAGCAGCGAAAAATGCCAATA----CTCTAGAGACAAAATATCTTTCATTTTC 9585 Query 93553 TTTAA---GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCA 93609 || | |||| ||| || | |||||| | ||||| ||||||| | ||||| Sbjct 9586 ATTCAATTTGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCA 9645 Query 93610 AAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 || || ||||| ||||| || || | | ||| || || || ||| ||||| || || Sbjct 9646 GAAAGAAGCTTCAGCTTTCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAACAT 9705 Query 93670 GACAAAACGA 93679 ||| ||||| Sbjct 9706 CACATAACGA 9715 >seq2 Length=135431 Score = 156 bits (172), Expect = 5e-33 Identities = 579/901 (64%), Gaps = 35/901 (4%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||| |||||||| || |||| | |||||||||||||| || || || | Sbjct 59348 CATTACACCGGCCTTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGC 59407 Query 92850 CAA--AGATATC------GAATTCACTAGTGATTGGATTCTTGGCGTTATAATACTTTTC 92901 ||| |||||| ||| ||| | |||||| | | || |||||||||| Sbjct 59408 CAAGGAGATATTTTCCATGAAATCA------AATGGATTAGTAACATTGTAATACTTTTT 59461 Query 92902 ACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC 92961 | || | ||||||| |||||| |||||||| | ||||| ||||||| || Sbjct 59462 ATTTCCAAAGGCCACTAATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTC 59521 Query 92962 ACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTAC 93021 |||||||||||| | | | ||| || || || ||| | || | | |||||| || Sbjct 59522 ACAATTCATTCCCAATAAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGT 59581 Query 93022 AACGGCTTCTTTCAAGATTTCTATTACTCTACTATTT-----GGTGGTTTTTGTACGACA 93076 || || || | | ||||| ||| | |||| | ||||| | | | Sbjct 59582 CACAGCCTCGGTAATGATTTT-----CTCAATGATTTCTGGAGAAGGTTTATTCTTTAAA 59636 Query 93077 TAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136 || | | | || || ||| | || || || | ||||||||||| | ||||| ||| Sbjct 59637 TACGAGAATAACAAACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCA 59696 Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196 || ||||| || ||||| | || || | |||||| | ||| || |||| ||||| Sbjct 59697 TTCGAAAATGTCAATCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAAC 59756 Query 93197 CTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTT 93256 |||| |||||||||||||| ||||| ||||| || || | | || ||| | Sbjct 59757 GAACCACTGAAAAATATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAA 59816 Query 93257 GCGGAAT--TACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 || || | | || ||||| | | |||||||||||||||| | || | || Sbjct 59817 GC---ATCCTCGTCTTGAATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGG 59873 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGC-TCGTCCGAATCTCGTATGTATGTATC 93372 | |||| ||||| ||||| | | || ||| || || | || | |||||| || Sbjct 59874 ATATTTTCAATAGCATTAAACAAAAAGTC-CGCTTCTTCTGGGTCCTTGAAGTATGTTTC 59932 Query 93373 GATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAA 93432 |||||||| ||||| | || ||||||| || ||||| || || || ||| | Sbjct 59933 GATTAACAACGAATAAGTCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATAC 59992 Query 93433 ACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGAC 93492 | ||| || | || || ||||| | | || | || || | || |||||||| Sbjct 59993 CAGTTGAGCCTCTGGTATTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGAC 60052 Query 93493 TATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC 93552 |||||||| || || ||||| || ||||| | | || ||| | | |||| || Sbjct 60053 AATACCATCCGAGGCAGCAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTC 60112 Query 93553 TTTAAGCTTA---TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCA 93609 || | ||| | ||| |||| | |||||| | || | ||||| | ||||| Sbjct 60113 GTTCATTTTATTGTTCCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCA 60172 Query 93610 AAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||||| || | |||||||| | | ||||| || |||| | ||| ||| |||| Sbjct 60173 AAACGAGGCCAACGACTTTTTGTAGAATTGCCATAACTCCGGATACTTAATAGGATATAT 60232 Query 93670 G 93670 | Sbjct 60233 G 60233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854591002080