Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq31 123 3e-23 seq38 118 1e-21 >seq31 Length=62326 Score = 123 bits (136), Expect = 3e-23 Identities = 355/540 (66%), Gaps = 12/540 (2%) Strand=Plus/Minus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 ||||||||||||||| | || || | || || ||||| |||| ||||| |||||||| Sbjct 2112 CCACATATCAAACTGTAATATCCCATTTGATGCCGGCGAGCCCTGGAATGTTTCATATGG 2053 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTC--GCCTCGAGGGCTGCGTGATACATTGTCTCA 116181 |||||| | |||||||| | || ||||| || || || || || || || ||| Sbjct 2052 GCCCTCTTTCATTGCCAATTC--AACTGAGGCCTCAAGTGCAGCATGGTATATAGTTTCA 1995 Query 116182 AAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA 116241 || || || ||| | || || ||| | |||||||| | | || | | | Sbjct 1994 AATATCTGAATATTTAATGTTTTAGCCATTGCAGAATCAAAAGGTAATCGAAGCTCAGCA 1935 Query 116242 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 116301 || | ||| || | ||||| ||||| | ||||||| || |||||| |||| || | | Sbjct 1934 AACAAATCTGCCAAGCCTTGTACACCCAAAGCAATTGGACGGTGTCTCTTATTTGAATAT 1875 Query 116302 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 116361 || || | || ||||| | ||| || || | || | ||| | || | Sbjct 1874 TCTGCCGTTTTAACAGGATATTTTGTTACATCAATCACTTTGTTCAAATTCCTTGTCAAG 1815 Query 116362 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA---ACTGCGAGTCTCTTCA---TTG 116415 || || |||| || | ||||| ||||||| | || | |||| || Sbjct 1814 ACTTTGGTGACAGAGTGCAATTTTTCAAAATCAAATGCAATGGCATCCTCTGTGGTTTTC 1755 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GT 116474 | ||| |||| | || | ||||| | ||| ||||||| || || || | | | | Sbjct 1754 AAATATGTAGGCAATGCAAGAGACGCTAAATTGCACACAGCAGTTTCTTC-TGGTGATGA 1696 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 || || | |||||| ||||||||||||| ||| || || || | ||| ||||| || Sbjct 1695 ATATTCAACAATTTCGCAACACAAATTTGAAGACTTTATTGTCCCGATGTTTTTTTGGTT 1636 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||| ||||||||||| || || ||||| |||||||| || || || || ||||| || Sbjct 1635 TGATTTTGTGTTACAGGCGTCTTTGTATAGCATATAAGGACCACCTGTTTCAGTTTGAGA 1576 >seq38 Length=58422 Score = 118 bits (130), Expect = 1e-21 Identities = 888/1412 (63%), Gaps = 51/1412 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | |||||||| || || ||||||||||||||||| ||||| | ||| || Sbjct 21539 TAAATGTTAGAAGTGTATGGTTCGAAACACTCATTGTTACCCAAAATTTGTGATGTAGAA 21598 Query 115963 GCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTGCGGAGACCCACCCC--CCTAATGCGT 116019 || || ||||| || || | | | |||| ||| | | ||| | || ||| | Sbjct 21599 GCAGTAGGCATTGGAGCAACTAATAAGGA-GTTTCTCATACCATGCTTAGCCAAATT--T 21655 Query 116020 TCCTTGAGGGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACT 116077 | || | | ||||| || || || || ||| | | | ||| | |||||||| Sbjct 21656 TGTTTTAATGTATCCCAATCCCATAATTCAG--TTGGTTTTCTGTTCCATAAATCAAACT 21713 Query 116078 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 | | | |||||| || || || || || | | || || || | || || | | | Sbjct 21714 GTAATAAACCTTGAGAGGCAGGGGAGCCTGGATAAGTTTCGTAGGCACCTTCTTCTTTAG 21773 Query 116138 CCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 116193 ||||||| | |||| || | || || || || || ||||| ||||| || Sbjct 21774 CCAATTCAACAGAAGCT----TCAACAGCAGCATGGTAAATAGTCTCGAAAATTTGAATG 21829 Query 116194 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCG 116253 || | | | |||| || | ||| ||||| | | | | ||||| |||| || Sbjct 21830 TTTAATTCTCTGGCTTCTTGGGAGTCAAATGGTAATCTCAATTCCATAAAGGCATCAGCC 21889 Query 116254 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTC 116312 | |||||| ||||| | ||||||| | ||||||||||| || |||||| || ||| Sbjct 21890 AAACCTTGAACACCCAAAGCAATTGGTCTGTGTCTCATATTTGATCTTTCG-GCT-TCTG 21947 Query 116313 CA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 | | || ||| || | || ||||| || || | || |||||| ||||| |||| Sbjct 21948 GAACTGGGTAATGGTTGCGGTCAATAACTCTGTTCAAGTTACGGGTGACTACCTTGGTGA 22007 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTG---CGAGTCTCTTCATTGA---CAT---ACT 116422 ||||| | ||| |||||| || | ||| | | | |||| | | || Sbjct 22008 CATCATGTAACTT------ATCAAAGTTGTACCAAGTAT-TACTTTGATCGCTTTCAACA 22060 Query 116423 TAGGAAGG----GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 116478 | || || || || || |||| ||||| |||| | ||||| | ||| || Sbjct 22061 AATGATGGTAAAGCAATGGAGGCCAAGTTACAAACAGCGACTTCATCTGGAGCAGAATAT 22120 Query 116479 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 116538 || | |||||| ||| || || ||| ||||| | |||||||||||||| || || Sbjct 22121 TCAACAATTTCACAACATAAGTTGGAAGATTTAATAATACCCAAGTTCTTTTGGTTGGAT 22180 Query 116539 TTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTG 116598 || ||||||| | ||| ||||| | |||| |||| || ||||| || ||||||| Sbjct 22181 TTGTTGTTACATGAATCTTTGTACAACATAAATGGAGTACCCGTTTCTGTTTGGGCTCCC 22240 Query 116599 AGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCG 116658 | ||||| | ||| | | ||| | || || | || || | ||| Sbjct 22241 AAGATAGCGTACCACAATTTTTGGGCCTTGATGGTCTGTCTGCCACGGTTTTCTTTTTCG 22300 Query 116659 TACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTA 116718 || | || || | | || || || ||||| | | || | | ||||| |||| | Sbjct 22301 TATCTGGTATATAATTCTTCGAATTCGTCACCGTAAACATCAGCCAAACCTGGGGCCTCA 22360 Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778 | ||| |||| | || ||| | ||| | || || | |||||||| | |||||| Sbjct 22361 TTTGGTGAGAACAAAGTCCAATCACCGTTTTGTTCGACTCTTTTCATGAACAAGTCTGGA 22420 Query 116779 ATCCAGAGCGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACG 116837 ||||| | || | ||| | ||| | | | || |||||| | || ||||| | Sbjct 22421 ATCCATAAAGCTGGGAACAAATCTCTGGCTCTGA-TTTCTTCTTTACCATGATTCTTTCT 22479 Query 116838 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC 116896 | || | || || | ||| || |||||| ||||| | ||||| || | | ||| Sbjct 22480 GATGTCAATGAAATCAAAGATGTCACTGTGCCATGGTTCTAAGTACAAGGCAAAGGCACC 22539 Query 116897 ---CCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCA 116953 ||| | |||| | || | ||||| | || || || || || | | || Sbjct 22540 AGGTCTTTTG-TTACCACCTTGATCAACATAACGTGCAGTGTTATTGAACACTCTTACCA 22598 Query 116954 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTGGCTCTG 117012 ||||||| ||||||| ||| ||||| || || ||| || || | | | | Sbjct 22599 TTGGAATAATACCATTAGAAGTACCATTGGTACCAGCAATGTAAGCACCAG-TAGAACGA 22657 Query 117013 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTG 117072 | | |||||| || | |||||| || ||||| | ||||| || || ||| | Sbjct 22658 ATGTTGTGGATATGTAAACCAATCCCTCCTGCACTTTTTGAAATCAAAGCACACGATTTT 22717 Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 117132 | | | | || || || || || || ||| |||| | || | | |||||| ||| Sbjct 22718 AAAGTATCATATATACCTTCAATAGAATCATCCTTCATAGCAAGCAAGAAGCATGAAGAC 22777 Query 117133 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT 117192 ||||| || |||||||||||||| ||||| | | || | | ||| | || | | | Sbjct 22778 ATTTGGGGTCTTGGTGTACCAGCATTGAACAAGCAAGGAGAACCATGGGTAAAGAATCTT 22837 Query 117193 TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATT 117252 || |||||| | ||||| || | ||| || || || | ||||| ||||| | Sbjct 22838 TGAGACATCAAGTTATAGGTTTCAATGACTCTTGGTATATCATTACCGTGGATACCAACA 22897 Query 117253 GAGACCCGCATAAACATGTATTGGGGTGTTTC 117284 | ||| | ||| | || | ||||||| |||| Sbjct 22898 GCGACTCTCATGATCAAATGTTGGGGTCTTTC 22929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500359394720