Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq38 163 3e-35 seq209 111 2e-19 seq243 105 8e-18 seq90 93.3 5e-14 >seq38 Length=58422 Score = 163 bits (180), Expect = 3e-35 Identities = 846/1324 (64%), Gaps = 43/1324 (3%) Strand=Plus/Plus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 |||||||| ||| ||||| || | |||||| || ||||| | ||||| ||| Sbjct 21500 TTGACAATTTGAAATTCTCCTGCTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGT 21559 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 || || || ||||| |||||||| ||||||| || || || || |||||||| || | Sbjct 21560 TCGAAACACTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACT 21619 Query 106016 AAAAGACTGTTACGAAGACCCT--TTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG- 106072 || | ||| | | ||| | || | || || || | |||||| || Sbjct 21620 AATAAGGAGTTTCTCATACCATGCTTAGCCAAATT--TTGTTTTAATGTATCCCAATCCC 21677 Query 106073 -TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGG 106131 || || || ||||||| |||| | | |||||| || | | ||||| || | || Sbjct 21678 ATAATTCAG-TTGGTTTTCTGTTCC-ATAAATCAAACTGTAATAAACCTTGAGAGGCAGG 21735 Query 106132 AGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCTCGCCTCCA 106190 || || | | || || |||| ||||| ||| |||||||||| ||| || || | Sbjct 21736 GGAGCCTGGATAAGTTTCGTAGGCACCTTCTTCTTTAGCCAATTCAACAGAA-GCTTCAA 21794 Query 106191 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 106250 | || || || || || || || || || || | || ||||||| | || | Sbjct 21795 CAGCAGCATGGTAAATAGTCTCGAAAATTTGAATGTTTAATTCTCTGGCTTCTTGGGAGT 21854 Query 106251 CAAATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 106307 |||||| ||| | ||| ||||| |||| || | |||||||||||||||| ||| Sbjct 21855 CAAATG-GTAAT--CTCAATTCCATAAAGGCATCAGCCAAACCTTGAACACCCAAAGCAA 21911 Query 106308 TAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTC 106365 | |||||||||| |||||| || |||||| || ||| ||| || ||| || | ||| Sbjct 21912 TTGGTCTGTGTCTCATATTTGATCTTTCG-GC-TTCTGGAACTGGGTAATGGTTGCGGTC 21969 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA--- 106422 ||| |||| ||| | || ||| || | ||| |||| ||||| | || ||| | Sbjct 21970 AATAACTCTGTTCAAGTTACGGGTGACTACCTTGGTGACATCATGTAACTTATCAAAGTT 22029 Query 106423 --ATCAA----AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAA 106476 | ||| | | || || ||| | ||| | ||| | || || || ||||| Sbjct 22030 GTACCAAGTATTACTTTGA-TCGCTT--TCAACAAATGATGGTAAAGCAATGGAGGCCAA 22086 Query 106477 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGA 106536 || |||||||| ||||| | | | || || | |||||| ||| |||||||| Sbjct 22087 GTTACAAACAGCGACTTCATCTGGAGCAGAATATTCAACAATTTCACAACATAAGTTGGA 22146 Query 106537 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAG 106596 | ||||| | ||||| ||||||||||| || ||||| || | ||| ||||| | Sbjct 22147 AGATTTAATAATACCCAAGTTCTTTTGGTTGGATTTGTTGTTACATGAATCTTTGTACAA 22206 Query 106597 CATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGC 106656 ||| | || || ||||| || || || | | || || | ||||| | ||| Sbjct 22207 CATAAATGGAGTACCCGTTTCTGTTTGGGCTCCCAAGATAGCGTACCACAATTTTTGGGC 22266 Query 106657 --TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714 || | || | || | || || ||||| | || || | |||| || Sbjct 22267 CTTGATGGTCTGTC--TGCCACGGTTTTCTTTTTCGTATCTGGTATATAATTCTTCGAAT 22324 Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 106774 || ||||| | || | | |||||| |||| | ||| |||| | || ||| | | Sbjct 22325 TCGTCACCGTAAACATCAGCCAAACCTGGGGCCTCATTTGGTGAGAACAAAGTCCAATCA 22384 Query 106775 CCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834 || | || || | |||||||| | |||||||||||| | | || || | |||| Sbjct 22385 CCGTTTTGTTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAAGCTGGGAACAAATCT 22444 Query 106835 CT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 106893 || | | || ||||| | ||| || || || | |||| ||| || | ||| || Sbjct 22445 CTGGCTCTGA-TTTCTTCTTTACCATGATTCTTTCTGATGTCAATGAAATCAAAGATGTC 22503 Query 106894 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGAT 106949 ||||||||| || | || | || | | || |||| | ||| |||||| Sbjct 22504 ACTGTGCCATGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTTG-TTACCACCTTGAT 22562 Query 106950 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 107009 ||||| || || ||| || || || | | ||||||||||||||||| || || Sbjct 22563 CAACATAACGTGCAGTGTTATTGAACACTCTTACCATTGGAATAATACCATTAGAAGTAC 22622 Query 107010 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 107069 |||| || || ||| || | | | | | | ||||| || | ||||| | Sbjct 22623 CATTGGTACCAGCAATGTAAGCACCAGTAGAACGAATGTTGTGGATATGTAAACCAATCC 22682 Query 107070 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129 | || || | ||||| || |||||| | | ||| |||| ||||| | || | Sbjct 22683 CTCCTGCACTTTTTGAAATCAAAGCACACGATTTTAAAGTATCATATATACCTTCAATAG 22742 Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 107189 | || ||||| | || | | |||||| ||||| || ||||||||||||||||||| Sbjct 22743 AATCATCCTTCATAGCAAGCAAGAAGCATGAAGACATTTGGGGTCTTGGTGTACCAGCAT 22802 Query 107190 TGAA 107193 |||| Sbjct 22803 TGAA 22806 >seq209 Length=22522 Score = 111 bits (122), Expect = 2e-19 Identities = 110/141 (78%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| |||||||||||||| || || | |||||||||||||||||| | |||||| Sbjct 9044 TATGGCCGTGTTGCACCACGTTCAGGATTGGCTGTGAAGCATGGTATTTCAACTGGTGCT 8985 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 ||||||||||| |||| ||| |||||||| ||||| || | || |||||| | || Sbjct 8984 GGTGTTATTGACGCCGATTATCGTGGTGAAGTGAAAGTAGTCTTATTTAATCACAGTGAT 8925 Query 155164 AAAGACTTTG-AGGTAAAGAA 155183 ||||| || | | ||||||| Sbjct 8924 AAAGATTTCGAAATTAAAGAA 8904 >seq243 Length=19219 Score = 105 bits (116), Expect = 8e-18 Identities = 352/536 (66%), Gaps = 39/536 (7%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| ||||||| | |||| | || |||||||| | ||| Sbjct 9128 GCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCT 9187 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | ||| | ||| |||||||| | |||| ||| ||||| || ||||| || Sbjct 9188 GGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCA-AATGAACCACTAAAGAAAAT 9246 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG----T 117448 ||| || || ||||| |||| | | || | | | || ||| | | Sbjct 9247 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATA----CAAGGCTTCATCATCTT 9302 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGG--ATGGC 117506 || |||||| || ||||| | || ||||| | ||||||||| | | |||| ||||| Sbjct 9303 GAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATA--TTGGCAATGGC 9360 Query 117507 TTCAAATAACT-----GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTT 117561 | |||||| | ||||||| || ||| || ||||| | ||||| ||| Sbjct 9361 ATTAAATAAGTAATCGGCTTCTTG--AGG---ATCTTTTATGTAAGTTTCAATTAATAAA 9415 Query 117562 GAATATGTTTCGCCATGAACCATTTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGC 117620 || || ||||| ||||| |||| || ||| | || | |||||||||| || Sbjct 9416 GAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAAC-CGTAGAATGATTTGGC 9474 Query 117621 TTCGCTTATCTGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 117680 |||| | || |||||| || || || | | | | || ||| |||||| ||||| Sbjct 9475 TTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATC 9534 Query 117681 GGACCCAGCAAAGAATGCCAGGATGTACTTTATG-----AATTTCTTTTCATTTTCATTC 117735 || |||| || ||||||| |||| || ||| ||||| ||||||||||| Sbjct 9535 AGAAGCAGCGAAAAATGCCAA----TACTCTAGAGACAAAATATCTTT-CATTTTCATTC 9589 Query 117736 A---GGGTCTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 | | | |||||||| || | |||||| |||||| | |||||| || ||||| Sbjct 9590 AATTTGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCA 9645 >seq90 Length=39169 Score = 93.3 bits (102), Expect = 5e-14 Identities = 193/284 (68%), Gaps = 9/284 (3%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC- 9337 ||||| |||||||| ||| ||| | ||| || | ||| ||| ||||||||||| || Sbjct 37921 TCAAACCCATCCATTTCTACCAACAATTGATTCAATGTTGTTTCACGTTCATCATTGGCA 37862 Query 9338 ----TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 9393 |||||| || | | | ||||| || || | ||||| || ||||||| || | Sbjct 37861 CCAGTGGCATTCCCCTTGGAA--CGTTGTTTACCAATAGCATCGATTTCATCAACAAACA 37804 Query 9394 CAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 |||| | || |||||| || || | | ||| | ||| ||||| || || || | Sbjct 37803 CAATCGAAGGGGCATTTTCACGTGCAGTCTTAAATAAATCACGAACTCTAGATGCTCCAA 37744 Query 9454 CACCAACAAACATCTCCACAAAGTTTG-CGGCGGAACATTGGATGAAGGGGACATTAGAT 9512 ||||||||||||| || ||||| | || | | |||| | | ||| || || | | Sbjct 37743 CACCAACAAACATTTCTACAAATTCTGACCCAGAAACAGAGTA-GAATGGAACTCCTGCT 37685 Query 9513 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTgg 9556 ||||| ||| | || ||| || | ||| ||||| || ||||| Sbjct 37684 TCACCAGCAGTTGCCTTGGCAAGTAAAGTTTTACCTGTCCCTGG 37641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974221714080