Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq243 383 2e-101 seq38 378 8e-100 seq2 275 7e-69 seq31 250 3e-61 >seq243 Length=19219 Score = 383 bits (424), Expect = 2e-101 Identities = 626/896 (70%), Gaps = 7/896 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||| || || | ||||||||||||||||||||| || || || | || || || Sbjct 8833 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8892 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| |||||||||||||| | ||||| |||| ||| ||| ||||| | || | Sbjct 8893 TTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGTTACCTAAGGCCAACAA 8952 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||| || || |||| ||| ||| ||||| | ||| ||||| || | || Sbjct 8953 CAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAACAA 9012 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || || ||||| |||| | |||| || | || || || || | ||||| Sbjct 9013 GGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAATAAT 9072 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | |||| | ||| | || || | | | ||| ||||| ||||| ||||| Sbjct 9073 TTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAATAAACAAGCAAA 9132 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||| |||| || || ||||| | ||||| || || || || || || || ||||| Sbjct 9133 GTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCTGGCAT 9192 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | ||||| ||||| |||||||| |||||||||||||| ||| |||||| |||||||| Sbjct 9193 TAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAATACCTTC 9252 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 ||||| ||||| ||||||| |||||| ||||| || |||| || ||||||||||| Sbjct 9253 AACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAATCCATTT 9312 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 | ||||| ||||| ||||||| | |||||| || | | || | |||||||| || Sbjct 9313 GATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAATAAGTA 9372 Query 19209 CATACGC-TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 || || || | | |||||| | || | || || |||||| ||| ||||||||| Sbjct 9373 -ATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGGTTTCTGAAT 9431 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 |||| ||||| || || || || ||||| || || | ||||| | | || |||| Sbjct 9432 GAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAAGTTGAACTT 9491 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || | | || |||| | || |||||| ||| || |||||| ||| || ||||||| Sbjct 9492 CAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAGCGAAAAATG 9551 Query 19388 CTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTA 19443 | ||||| | | | | ||||| | |||||| | | ||| ||||||| |||| Sbjct 9552 CCAATAC-TCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCCAGTCATCC 9610 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 | ||||||| ||||| | |||||| | ||||| |||||||| || ||||| ||||| Sbjct 9611 AAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTTTCTTATAA 9670 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 | |||||| || ||| | ||| || || || || ||| | | | ||| ||||| Sbjct 9671 AAGTTCCAAATTTCATGGTATCTGATTGGGAACATCACATAACGACGTTTGTTTTC 9726 >seq38 Length=58422 Score = 378 bits (418), Expect = 8e-100 Identities = 1454/2276 (64%), Gaps = 72/2276 (3%) Strand=Plus/Plus Query 46983 GTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAA 47042 ||||| | ||| | | ||| || | || ||||| || ||||||||||||||||| ||| Sbjct 21161 GTAAATTGAATAGCAGCACTGGCAGCTTGTGTTCTCAAGTAATACATACCAGTCTTCAAA 21220 Query 47043 CCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATA 47102 ||| |||| ||||||||||||||||| || || ||| | || ||| || Sbjct 21221 CCTTTCTTCCAACCATAGAAATGCATACTGGTCAACTTACCCATTGTTGGGTCTTTGATG 21280 Query 47103 TGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAA 47162 ||||| || | |||||| ||||||||||||||| |||||||||| ||||| || | | Sbjct 21281 TGAATGTTTAATGATTGAGATTGATCAATAAATGCAGCTCTATCAGCAGCCATGTCGATA 21340 Query 47163 ATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGA 47222 ||| | |||||| || ||||| || || || || | | ||||| || || || | Sbjct 21341 ATATGCTTTTGTGAGATTTCCCAGACAGTCTTGTACAATGCCTTAATTTCATCAGGAATG 21400 Query 47223 TTAGT---ATTTTGAATAGATCCTCCgttttctataattttgttttttaattcatttgac 47279 || | | ||||||||| || ||| | ||||| | |||| | ||| | Sbjct 21401 TTTGGCAAAGCTTGAATAGAACCGTTGTTAGCAATAATACTACTTTTCATAGCATCATTC 21460 Query 47280 caaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCA 47339 || | ||| || || || | || ||||| ||||||||||||||||| Sbjct 21461 CAGACACCCAAATCAACCAAATCCTTCAACAAATATGGATTGACAATTTGAAATTCTCCT 21520 Query 47340 GATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCA 47399 | || ||||| | | || || ||| || |||||||| | | | ||||| || || Sbjct 21521 GCTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGTTCGAAACACTCATTGTTACCC 21580 Query 47400 AAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCA 47459 |||||||| | || || || |||||||| | |||||||||||| ||||| | ||| Sbjct 21581 AAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACTAATAAGGAGTTTCTCATACCA 21640 Query 47460 TATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTC 47519 | || | | | ||||||||| | || | ||| ||| Sbjct 21641 TGCTTAGCCAAATTTTGTTTTAATGTATCCCAATCCCATAATTCAGTTGGTTTTCTGTTC 21700 Query 47520 CAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGA 47579 || |||||| | || | | |||| | || || || ||| |||| || | | Sbjct 21701 CATAAATCAAACTGTAATAAACCTTGAGAGGCAGGGGAGCCTGGATAAGTTTCGTAGGCA 21760 Query 47580 CCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAAT 47639 || | | |||||| | |||| | ||||| | ||| || || || || || || Sbjct 21761 CCTTCTTCTTTAGCCAATTCAACAGAAGCTTCAACAGCAGCATGGTAAATAGTCTCGAAA 21820 Query 47640 ATTTTTATGTTTAGATTC-CTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAA 47698 |||| ||||||| |||| || |||||| || ||||| || | || Sbjct 21821 ATTTGAATGTTTA-ATTCTCTGGCTTCTTGGGAGTCAAATGGTAATCTCAATTCCATAAA 21879 Query 47699 TGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTC 47758 | ||| ||||| ||||||||||| | | |||||||||| || | |||| || || Sbjct 21880 GGCATCAGCCAAACCTTGAACACCCAAAGCAATTGGTCTGTGTCTCATATTTGATCTTTC 21939 Query 47759 AGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG---ANNNNNNNNNNN 47815 |||||||| | ||| || | ||| || |||| | | || | | Sbjct 21940 GGCTTCTGGAACTGGGTAATGGTTGCGGTCAATAACTCTGTTCAAGTTACGGGTGACTAC 21999 Query 47816 NNNNNNNACAATTTCTCTTAATTTATTAAAAT-----CAA-----ACTTGTTAT---TTA 47862 ||| || ||| |||| ||| | ||| |||| | || || Sbjct 22000 CTTGGTGACA---TCATGTAACTTATCAAAGTTGTACCAAGTATTACTT-TGATCGCTTT 22055 Query 47863 TAACAAACC-TATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 |||||| | ||| || || || || | ||||| ||||| || |||| |||| | Sbjct 22056 CAACAAATGATGGTAAA-GCAATGGAGGCCAAGTTACAAACAGCGACTTCATCTGGAGCA 22114 Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 | ||||| | |||||| ||||| || | |||| ||| ||||||| || | || Sbjct 22115 GAATATTCAACAATTTCACAACATAAGTTGGAAGATTTAATAATACCCAAGTTCTTTTGG 22174 Query 47982 TT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCT 48039 || ||| |||||||||| || ||||| | |||||| || || || |||||| | | Sbjct 22175 TTGGATTTG--TTGTTACATGAATCTTTGTACAACATAAATGGAGTACCCGTTTCTGTTT 22232 Query 48040 GAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTAT 48099 | | | | | ||||| | ||| | | ||||| || ||| | || | Sbjct 22233 GGGCTCCCAAGATAGCGTACCACAATTTTTGGGCCTTGATGGTCTGTCTGCCACGGTTTT 22292 Query 48100 CATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAG 48159 | | ||||||| | |||||||| | || ||||| || || || |||| | | || || | Sbjct 22293 CTTTTTCGTATCTGGTATATAATTCTTCGAATTCGTCACCGTAAACATCAGCCAAACCTG 22352 Query 48160 GACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATA 48219 | ||||| || | | ||| | |||||| | | | || ||||| |||| || | Sbjct 22353 GGGCCTCATTTGGTGAGAACAAAGTCCAATCACCGTTTTGTTCGACTCTTTTCATGAACA 22412 Query 48220 TATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 ||||| ||||| | |||| || ||||| || | ||| | |||||| || ||| || Sbjct 22413 AGTCTGGAATCCATAAAGCTGGGAACAAATCTCTGGCTCTGATTTCTTCTTTACCATGAT 22472 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 || || | | |||| || || | || ||| |||||||||||||| || | || | Sbjct 22473 TCTTTCTGATGTCAATGAAATCAAAGATGTCACTGTGCCATGGTTCTAAGTACAAGGCAA 22532 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 |||| |||| ||| ||||| |||||||| | ||| | ||||| || || | |||| Sbjct 22533 AGGCACCAGGTCTTTTGTTACCACCTTGATCAACATAACGTGCAGTGTTATTGAACACTC 22592 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 ||| |||||| | ||||||||| || |||||||||| || | ||| ||| ||| ||| Sbjct 22593 TTACCATTGGAATAATACCATTAGAAGTACCATTGGTACCAGCAATGTAAGCACCAGTAG 22652 Query 48460 CTCTTATATTACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518 | || || || || || ||| || || ||||| |||| || || | ||||||| Sbjct 22653 AACGAATGTTGTGGATATGTAA-ACCAATCCCTCCTGCACTTTTTGAAATCAAAGCACAC 22711 Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 ||| | |||||||| || ||||| ||| |||||| ||||| | | || || Sbjct 22712 GATTTTAAAGTATCATATATACCTTCAATAGAATCATCCTTCATAGCAAGCAAGAAGCAT 22771 Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 ||||||||| || || || | ||| || || ||||| |||| |||| Sbjct 22772 GAAGACATTTGGGGTCTTGGTGTACCAGCATTGAACAAGCAAGGAGAACCATGGGTAAAG 22831 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT--GATGTA 48696 || | | || | ||| ||||| |||||||| || ||||| |||| || | Sbjct 22832 AATCTTTGAGACATCAAGTTATAGGTTTCAATGACTCTTGGTATAT--CATTACCGTGGA 22889 Query 48697 TACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTT 48756 |||| | || || | ||| | || || ||| |||||||| ||| || || || Sbjct 22890 TACCAACAGCGACTCTCATGATCAAATGTTGGGGTCTTTCGGCAACCTTACCGTTGATAC 22949 Query 48757 TCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTAT 48816 || | ||| ||| ||||||| ||||| || |||||||| ||||| ||| || | | Sbjct 22950 GTAACAAATAAGATCTTTCCAAAGTTTTGAACCCAAAATAATTGTAGCTAAAATCTCTGT 23009 Query 48817 CATTAATAATTGATGAATTTATTCTTTCCTTATGTTTATATACTACATCCATTACATTT- 48875 | | || ||| | || |||| | || | || || ||| || || || ||| Sbjct 23010 CGTAAACAATGGCCGAGTTTAATTCATCTTCGTG-TTCCATAATA-ATGTCATAGGTTTC 23067 Query 48876 -TTTGATATAATTG-------------ATTCCTTG--TAAAGAT-CTTCTACAACATCAC 48918 || || || || | | || | | | || || || || || ||| Sbjct 23068 CTTGGAAATCATAGGAGAGTGCAACCCAGTCTTAGGATTAATATACTCATATAA-ATCCT 23126 Query 48919 TAAATAtttt---------tt---ttGTTTCTTTATGAAGATTAGATATAGATATTCTAG 48966 || ||| ||| || | |||| || || | ||| |||| | ||||||| Sbjct 23127 TAGATACTTTGGAATACTGTTTGGTGGTTTGCTTGTGTAAATTTGATACGGCAATTCTAG 23186 Query 48967 CAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTA 49026 | ||||| | ||||||||| |||||||||||||| |||| || |||||||| || | Sbjct 23187 CGGCTAACACAGCATAATCAGGATGAATTGTTGTCATTGTAGCAGCAATTTCTGCAGCCA 23246 Query 49027 ATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTA 49086 | |||| || || ||||||| || || || | ||| |||||||| | | Sbjct 23247 AGTTATCCAACTCGATAGTAGTAACCCCCTGGTAAACACCTGATATAACTTTTTGGGTAA 23306 Query 49087 TATTTACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATG 49146 || ||||| || | |||| || | || ||||||||| ||| | ||||| | Sbjct 23307 TAGCAACTGGTTCAACGTGATTTGGATTTAAACCGTAACATAATCTTTGAACTCTAGCGG 23366 Query 49147 TAATTTTATCAAACATTATATTCTCTTTACGACCGTCACGTTTTAT-AACAAACAT 49201 | ||||| ||||| || ||||||||| || || | | |||| |||| |||| Sbjct 23367 TGATTTTGTCAAAACGTACTGGCTCTTTACGGCCATCTC-TCTTATAAACATACAT 23421 >seq2 Length=135431 Score = 275 bits (304), Expect = 7e-69 Identities = 598/889 (67%), Gaps = 11/889 (1%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||| || ||||| || || | |||||| |||||||||||||||||||| || | Sbjct 59348 CATTACACCGGCCTTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGC 59407 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 || || ||| |||||| |||||||||||||| | ||||| || ||||| ||| Sbjct 59408 CAAGGAGATATTTTCCATGAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCC 59467 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATT 18836 || | | || || || ||| || ||||||| || ||| | ||||| |||||||| Sbjct 59468 AAAGGCCACTAATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATT 59527 Query 18837 CATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC 18896 |||||| | ||| || || || ||||| | | | ||| || || ||| | || || Sbjct 59528 CATTCCCAATAAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGC 59587 Query 18897 CTCTGATATAATAGATACAACTCTATCTTCATTAGG---AGGGTATAGAAGATGTTTAAA 18953 ||| | || || ||| | ||| | ||| | | || || | | || Sbjct 59588 CTCGGTAATGATTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTA-AATACGAG--AA 59644 Query 18954 CATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAA 19013 | |||||| ||| |||| || | || ||||||| | ||||||||||| ||||| Sbjct 59645 TAACAAACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAA 59704 Query 19014 TGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGA 19073 ||| || || ||||||| || ||||| ||||||||||| || | ||||| || ||| Sbjct 59705 TGTCAATCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT 59764 Query 19074 AAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT 19133 || ||||||||||| || || ||||| ||||| | ||| || |||| |||||| | Sbjct 59765 GAAAAATATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTC 59824 Query 19134 ATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTAT 19193 | |||||||| | | |||||||| || || | | | | |||| || | || || Sbjct 59825 GTCTTGAATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAAT 59884 Query 19194 AGAATTAAATAGATACATACGC-TCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 || |||||| | | | | ||| || |||| || || | |||| || || || || Sbjct 59885 AGCATTAAACA-AAAAGTCCGCTTCTTCTGGGTCCTTGAAGTATGTTTCGATTAACAACG 59943 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 || | |||||||| || ||||| || |||||||| ||| | | || | Sbjct 59944 AATAAGTCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCT 60003 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372 ||| ||| ||||||||| ||| || |||| ||||| || ||||| || || ||||| Sbjct 60004 CTGGTATTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCG 60063 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA- 19431 || ||||| ||||| || || | || ||| | |||||| | | | | | || Sbjct 60064 AGGCAGCAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTAT 60123 Query 19432 --TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 ||||| || | ||||||| ||| || | |||||| |||||||||| || ||| Sbjct 60124 TGTTCCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGAGGCCA 60183 Query 19490 CTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 | ||||| || | | ||||| || |||| | |||||| |||| Sbjct 60184 ACGACTTTTTGTAGAATTGCCATAACTCCGGATACTTAATAGGATATAT 60232 >seq31 Length=62326 Score = 250 bits (276), Expect = 3e-61 Identities = 480/697 (69%), Gaps = 8/697 (1%) Strand=Plus/Minus Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 ||| ||||| |||||| || |||||||| || |||||||| | | || ||| || Sbjct 1518 TTCATATTTGCAATATAATTTTTCAAATTCCTCACCATACACGTCACTTAGACCAAGAGC 1459 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 |||||| || | | ||| | ||| || || | ||| || | ||||||| | || Sbjct 1458 TTCATTGGGCGAAAACAAAGTCCAGTCAGAATTGTCTTTCACACGTTTCATAAACAAGTC 1399 Query 48224 TGGTATCCAAAGAGCTATAAAT-AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 |||||||| | | | ||||| ||||| |||||||| | ||||||||| || ||| Sbjct 1398 GGGTATCCATA-ATCCATAAAACAAATCTCTAGTTCTCATTTCTTCATTCCCGTGATTTT 1340 Query 48283 TTTTAAGTTC-AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 || | | ||| |||| | || | |||||| ||||||||||||||| |||||| || | | Sbjct 1339 TTCTCATTTCTAAGATA-TCAAAAATATCACCATGCCATGGTTCTATATATATGGCAAAT 1281 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 | ||||| |||||| || |||||||| | |||||| |||||||| || ||||| | Sbjct 1280 GCTCCTGGACGTTTACCCCCACCTTGATCGACATATCTTGCAGTATTATTGTAAACACGC 1221 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 ||||| || || | || ||||| |||||||||| || | |||||| ||| | | | Sbjct 1220 AACATGGGTACTAACCCGTTTGAACTACCATTGGTGCCAGCAATATACGCACCATTGGAT 1161 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 || ||||| | ||||||||| || |||| || || |||||||| | Sbjct 1160 CTAATATTGTGCACATGAATACCTATTCCTCCTGATGCCTTGGAAATTAGAGCCGCCTCA 1101 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || | | || || || || ||| ||| |||| || ||| ||||| Sbjct 1100 TTAAGAGTCTTGAATATCCCATCGATTGAATCTTCTTTCATGGCTACTAGGAAACATGAT 1041 Query 48582 GA-CATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG-AGATGCATGAATAAACC 48639 || | | | || | | | || | |||| ||||||| || ||| ||||||||||| Sbjct 1040 GATAAATAGTTGAATTC-ACTACCAGCATTATATAATGTAGGCAGA-GCATGAATAAAGT 983 Query 48640 ATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATAC 48699 | |||| || | || | ||||||||| | || | || | ||| || || || | Sbjct 982 ACTTCTGGGACATTAAGTCATATGTTTCCACAATGGCATTCAAATCGTTCTGGTGAATTC 923 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 |||| | ||||||||| || | ||| || || |||| ||| || | ||||| | Sbjct 922 CTATGGCTACACGCATGAATAAATACTGGGGCAATTCAGCAACTTCACCACCCATTTTTA 863 Query 48760 AAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 |||| ||||| ||||||||||||||| |||||||| Sbjct 862 AAAGGTATGAGCTTTCCAATGTTTTAATCCCAAAATA 826 Score = 138 bits (152), Expect = 1e-27 Identities = 325/480 (68%), Gaps = 23/480 (5%) Strand=Plus/Minus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| || |||||||| ||||||||||||||| || || || ||| |||| || Sbjct 2630 GCTGCTTGTGTTCGTAGATAATACATACCAGTTTTCAACCCCTTTTCCCAAGCATAAAAG 2571 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGG-TTCTGAAATATGAATATTAAGAGATTGACT 47122 || ||||||||| || | |||| || | || || ||||| | | ||| Sbjct 2570 TGACAACTAGTTAACTTGCCAATTGTAGGATTACGCAA-GTGTATATTCATACTTTGCAG 2512 Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||| |||| |||||||| || |||||||| | || || |||||| | || Sbjct 2511 TTGATCAACAAATTTTCCTCTATCTGCAGCCATATCAATGATCACTTTTTGTGACAATTC 2452 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGA 47239 ||| || |||||||| | |||||| || || || || | ||| | | |||||||| || Sbjct 2451 CCACACGGTTTTATATAATTGTTTGATTTCGTCAGGTATATTGGGTATTTTTTGAATTGA 2392 Query 47240 TCCTCCgttttctataattttgttttttaattcat--ttga---ccaaagttttcg-ttc 47293 ||| ||||| ||||| | || ||| |||| ||| ||||| | | | | Sbjct 2391 ---TCCATTTTCCATAATAATCTTATTT--CTCATAGCTGAATCCCAAATTCCAAGATCC 2337 Query 47294 agttaatgttt--ttaaA-AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCT 47350 | | ||| ||| ||||| | || || ||||||||| ||||||| | || |||| Sbjct 2336 ATTAAATCTTTAATTAAATACTTG----TTGACAATTTGATATTCTCCCGCTAACACTCG 2281 Query 47351 ACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGC 47410 ||| |||| | || ||||| || || | ||||||| ||||| |||||| | Sbjct 2280 ACGATTATACAAGTTTGAAGTATAAGGCTCAAAGCATTCATTGAATCCAAGAATTTGGGA 2221 Query 47411 AGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTAT 47470 ||||||||| || ||||| | || |||| ||| ||||||| ||| | ||||| || Sbjct 2220 AGTTGATGCCGTCGGCATCGGAGCTACTAGTAATGAGTTTCTTAAACCAAAATTTTGAAT 2161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102532486880