Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq243 284 2e-71 seq2 203 5e-47 seq65 141 1e-28 >seq243 Length=19219 Score = 284 bits (314), Expect = 2e-71 Identities = 572/842 (68%), Gaps = 22/842 (3%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| ||| ||| ||| |||| || |||||||| ||||| || |||| || || Sbjct 8830 AGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAAT 8889 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCG 17977 | ||| ||||||||||||||||| || || || ||| ||||| ||| | Sbjct 8890 GTTTTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTT-CTTGTTACCTAAGGCC 8947 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 | || |||||||| || || ||||| | ||||| ||||||| | || |||||||| Sbjct 8948 AACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCC 9007 Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097 | | | || |||||||| ||| | |||||||| | ||||||| || | Sbjct 9008 AACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTA 9067 Query 18098 ATTATGTTTATTACC----CTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA 18153 || || ||| || || || | | | ||| || || | | | || Sbjct 9068 ATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAA-------ATGAGCAAACAA 9120 Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| ||||| |||||||||||||||||||||||| | || || ||||| || || Sbjct 9121 TAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGT 9180 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 ||||| ||||||| |||||| ||||| | ||| || || || || || || | ||| Sbjct 9181 CAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAA 9240 Query 18274 GAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGC 18332 ||| ||||| ||||| ||| || || || | |||||||||| || | | || || Sbjct 9241 GAAAATACCTTCAACTGCA-GCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCAT 9299 Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 | |||||||| ||||| || ||| ||||| || ||| | | || | Sbjct 9300 CTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGG 9359 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 ||||||| || | ||| ||||| | ||||||||| ||||| || ||||| ||||| | Sbjct 9360 CATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGT 9419 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 | |||| ||||| ||| ||||||| || || |||| || || ||| | || |||| Sbjct 9420 AGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGG 9479 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 || ||||| || | | || |||| | || || ||| ||| ||||| |||| || Sbjct 9480 GAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAG 9539 Query 18573 ATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGAGATTG--- 18628 |||||||||||||| || | | | | |||| | ||||||| || || | ||| Sbjct 9540 CAGCGAAAAATGCCAATAC-TCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTA 9598 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| ||||| | |||||| | ||| | |||||| | ||||| ||||| | ||| Sbjct 9599 TTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCA 9658 Query 18689 GC 18690 || Sbjct 9659 GC 9660 >seq2 Length=135431 Score = 203 bits (224), Expect = 5e-47 Identities = 550/832 (66%), Gaps = 22/832 (3%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || ||| | || || |||||||| || || || |||| || || Sbjct 59358 GCCTTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATA 59417 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 | ||| ||||||||||||||||| || ||||| |||| | | || | | Sbjct 59418 TTTTCCATGAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACT 59477 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 ||||||| ||| || |||||||| ||||| || ||||||| || |||||||| || | | Sbjct 59478 AATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAAT 59537 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 | | || || ||||| | | | ||| |||||| || |||| ||| | || Sbjct 59538 AAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATG 59597 Query 18101 ATGTTTATTACCCTAGATTT-TGGCAA---TTTATTAATTATGTGATTATAATATAATAA 18156 || ||| | | ||||| ||| | |||||| ||| | | | |||| | || Sbjct 59598 AT-TTTCTCAAT---GATTTCTGGAGAAGGTTTATTCTTTAAAT-ACGAGAATA--ACAA 59650 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| ||| |||| ||||| | ||||| |||| | | || ||||| || ||| || || Sbjct 59651 ACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAA 59710 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAA---ACTACTAGAAAA 18273 || ||||| | || ||||| |||| ||| || || | ||| || || ||| ||||| Sbjct 59711 TCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAAA 59769 Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGC 18332 ||||||| |||||| || ||||| | ||||| |||||| | | | || | Sbjct 59770 --ATATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTC 59827 Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 | | ||||| | ||||| || ||| || | || ||| | || |||| Sbjct 59828 TT-GAATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAG 59886 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 ||||||||||| || ||||| | || || | || || ||||||||||| |||| Sbjct 59887 CATTAAACAAAAAGTCCGCTTCTTCTGGGTCCTTGAAGTATGTTTCGATTAACAACGAAT 59946 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 | | || ||||| ||| ||||||| |||||||| | || | | | |||||| | Sbjct 59947 AAGTCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTG 60006 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||| | || | | || |||| ||||| |||||||| || ||||| || | | Sbjct 60007 GTATTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGG 60066 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGT 18629 || || |||||||| || |||||| | ||||||| || || | ||||| Sbjct 60067 CAGCAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGT 60126 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 |||| || | | |||||| || |||| ||||| | ||||||||| || Sbjct 60127 TCCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGA 60178 >seq65 Length=44577 Score = 141 bits (156), Expect = 1e-28 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || ||||| ||||| ||||| |||||||| ||| |||| Sbjct 11571 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCTTCT 11512 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| ||||| |||||||| || || ||||| ||| Sbjct 11511 GACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAA 11452 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| ||||| || | ||||| ||||||||||| || || || Sbjct 11451 CAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTACAAC 11392 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || ||||| || | || | || || || || ||||||||||| |||| Sbjct 11391 AT--CCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGTG 11343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731863839627200