Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq243 284 2e-71
seq2 203 5e-47
seq65 141 1e-28
>seq243
Length=19219
Score = 284 bits (314), Expect = 2e-71
Identities = 572/842 (68%), Gaps = 22/842 (3%)
Strand=Plus/Plus
Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919
|||||||| ||| ||| ||| |||| || |||||||| ||||| || |||| || ||
Sbjct 8830 AGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAAT 8889
Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCG 17977
| ||| ||||||||||||||||| || || || ||| ||||| ||| |
Sbjct 8890 GTTTTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTT-CTTGTTACCTAAGGCC 8947
Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037
| || |||||||| || || ||||| | ||||| ||||||| | || ||||||||
Sbjct 8948 AACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCC 9007
Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097
| | | || |||||||| ||| | |||||||| | ||||||| || |
Sbjct 9008 AACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTA 9067
Query 18098 ATTATGTTTATTACC----CTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA 18153
|| || ||| || || || | | | ||| || || | | | ||
Sbjct 9068 ATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAA-------ATGAGCAAACAA 9120
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||| ||||| |||||||||||||||||||||||| | || || ||||| || ||
Sbjct 9121 TAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGT 9180
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
||||| ||||||| |||||| ||||| | ||| || || || || || || | |||
Sbjct 9181 CAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAA 9240
Query 18274 GAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGC 18332
||| ||||| ||||| ||| || || || | |||||||||| || | | || ||
Sbjct 9241 GAAAATACCTTCAACTGCA-GCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCAT 9299
Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
| |||||||| ||||| || ||| ||||| || ||| | | || |
Sbjct 9300 CTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGG 9359
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
||||||| || | ||| ||||| | ||||||||| ||||| || ||||| ||||| |
Sbjct 9360 CATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGT 9419
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
| |||| ||||| ||| ||||||| || || |||| || || ||| | || ||||
Sbjct 9420 AGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGG 9479
Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
|| ||||| || | | || |||| | || || ||| ||| ||||| |||| ||
Sbjct 9480 GAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAG 9539
Query 18573 ATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGAGATTG--- 18628
|||||||||||||| || | | | | |||| | ||||||| || || | |||
Sbjct 9540 CAGCGAAAAATGCCAATAC-TCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTA 9598
Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688
||||| ||||| | |||||| | ||| | |||||| | ||||| ||||| | |||
Sbjct 9599 TTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCA 9658
Query 18689 GC 18690
||
Sbjct 9659 GC 9660
>seq2
Length=135431
Score = 203 bits (224), Expect = 5e-47
Identities = 550/832 (66%), Gaps = 22/832 (3%)
Strand=Plus/Plus
Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920
|| |||| ||| || ||| | || || |||||||| || || || |||| || ||
Sbjct 59358 GCCTTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATA 59417
Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980
| ||| ||||||||||||||||| || ||||| |||| | | || | |
Sbjct 59418 TTTTCCATGAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACT 59477
Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040
||||||| ||| || |||||||| ||||| || ||||||| || |||||||| || | |
Sbjct 59478 AATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAAT 59537
Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100
| | || || ||||| | | | ||| |||||| || |||| ||| | ||
Sbjct 59538 AAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATG 59597
Query 18101 ATGTTTATTACCCTAGATTT-TGGCAA---TTTATTAATTATGTGATTATAATATAATAA 18156
|| ||| | | ||||| ||| | |||||| ||| | | | |||| | ||
Sbjct 59598 AT-TTTCTCAAT---GATTTCTGGAGAAGGTTTATTCTTTAAAT-ACGAGAATA--ACAA 59650
Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216
||| ||| |||| ||||| | ||||| |||| | | || ||||| || ||| || ||
Sbjct 59651 ACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAA 59710
Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAA---ACTACTAGAAAA 18273
|| ||||| | || ||||| |||| ||| || || | ||| || || ||| |||||
Sbjct 59711 TCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAAA 59769
Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGC 18332
||||||| |||||| || ||||| | ||||| |||||| | | | || |
Sbjct 59770 --ATATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTC 59827
Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
| | ||||| | ||||| || ||| || | || ||| | || ||||
Sbjct 59828 TT-GAATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAG 59886
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
||||||||||| || ||||| | || || | || || ||||||||||| ||||
Sbjct 59887 CATTAAACAAAAAGTCCGCTTCTTCTGGGTCCTTGAAGTATGTTTCGATTAACAACGAAT 59946
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
| | || ||||| ||| ||||||| |||||||| | || | | | |||||| |
Sbjct 59947 AAGTCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTG 60006
Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
| ||| | || | | || |||| ||||| |||||||| || ||||| || | |
Sbjct 60007 GTATTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGG 60066
Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGT 18629
|| || |||||||| || |||||| | ||||||| || || | |||||
Sbjct 60067 CAGCAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGT 60126
Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681
|||| || | | |||||| || |||| ||||| | ||||||||| ||
Sbjct 60127 TCCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGA 60178
>seq65
Length=44577
Score = 141 bits (156), Expect = 1e-28
Identities = 171/231 (74%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || || ||||| ||||| ||||| |||||||| ||| ||||
Sbjct 11571 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCTTCT 11512
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || ||||| ||||| |||||||| || || ||||| |||
Sbjct 11511 GACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAA 11452
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| |||| ||| ||||| || | ||||| ||||||||||| || || ||
Sbjct 11451 CAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTACAAC 11392
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
|| ||||| || | || | || || || || ||||||||||| ||||
Sbjct 11391 AT--CCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGTG 11343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731863839627200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |