Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq243 196 9e-45
seq2 194 3e-44
seq65 187 5e-42
>seq243
Length=19219
Score = 196 bits (216), Expect = 9e-45
Identities = 370/541 (68%), Gaps = 5/541 (1%)
Strand=Plus/Plus
Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890
||||||||| || |||||| ||||||| || || || || || || | || || ||
Sbjct 8833 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8892
Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949
| ||| |||||||||||||| | ||| || || ||| | || | || | | |
Sbjct 8893 TTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTTCTTGTTACCTAAGGCCAACA 8951
Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009
| |||||||| || || ||||||| ||||| |||| || | ||| ||||||||||| |
Sbjct 8952 ACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAACA 9011
Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069
| | ||| | ||||| || | ||||| || | || ||||||| |||| |
Sbjct 9012 AGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAATAA 9071
Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129
| | | | | | | ||| | | | || | |||| ||| | | |||||| |
Sbjct 9072 TTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGA---GCAAACAATAAACAAG 9128
Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189
|||| || || ||||||||||| || || | || || || || ||||| || ||||
Sbjct 9129 CAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCTG 9188
Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249
||||||| ||||||||||| | ||| || || || ||||| || | |||||| ||||
Sbjct 9189 GCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAATAC 9248
Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCC 39309
| || || ||||| || | || |||| | ||| ||| || ||||||| |||||
Sbjct 9249 CTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAATCC 9308
Query 39310 AATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 39369
| || || ||||| || ||||| |||| ||| | || ||||| | || || |||||||
Sbjct 9309 ATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAATA 9368
Query 39370 A 39370
|
Sbjct 9369 A 9369
>seq2
Length=135431
Score = 194 bits (214), Expect = 3e-44
Identities = 374/545 (69%), Gaps = 15/545 (3%)
Strand=Plus/Plus
Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891
|||||||| ||||||||| | ||||| || || || ||||| || | || || ||
Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420
Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951
| ||| |||||||||||||| | ||| ||||| |||| | || | ||||
Sbjct 59421 TCCATGAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAAT 59480
Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011
|||| ||| || |||||||||||||| || |||| || ||||||||||| ||||||||
Sbjct 59481 AATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAA 59540
Query 39012 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 39071
| ||| | ||||| | | ||| ||| || || ||||| | |||| ||
Sbjct 59541 GATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGATT 59600
Query 39072 ataattatattattttttgataa--tttata-tttaatatgattcgcatataGTAAACAT 39128
| | || |||| | || || ||||| ||||| || || ||| |||||
Sbjct 59601 TTC--TCAATGATTTCTGGAGAAGGTTTATTCTTTAA----ATACGAGAATAACAAACAG 59654
Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188
||| ||||||| || | |||||||| | | || |||||||| ||| || ||||||
Sbjct 59655 GCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCT 59714
Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAAT 39245
||||| || || || || || | ||| || |||| ||||| ||| ||| |||| |||
Sbjct 59715 GGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAA--AAT 59771
Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305
||||| || || ||||| || | | ||| | || ||| | || ||| |
Sbjct 59772 ATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA 59831
Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365
||||| | ||||||||||| ||||||| | |||| | || |||||||| ||||| |||
Sbjct 59832 ATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTA 59891
Query 39366 AATAA 39370
|| ||
Sbjct 59892 AACAA 59896
>seq65
Length=44577
Score = 187 bits (206), Expect = 5e-42
Identities = 183/236 (78%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || ||||||||| | || || || || || ||||||| || || || ||
Sbjct 11336 TTCTTACCACCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTG 11395
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| || ||||||| || |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 11396 TAGTCAGATAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGG 11455
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
|| ||||| || |||||||| ||||| ||||| || ||||| ||||| || ||
Sbjct 11456 TCTGGTGGAATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAA 11515
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||||| ||||||||||||||||||||| || || | ||| || |||||
Sbjct 11516 GATTCAACTTCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 11571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905125907733600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |