Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq243 196 9e-45 seq2 194 3e-44 seq65 187 5e-42 >seq243 Length=19219 Score = 196 bits (216), Expect = 9e-45 Identities = 370/541 (68%), Gaps = 5/541 (1%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||||||||| || |||||| ||||||| || || || || || || | || || || Sbjct 8833 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8892 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949 | ||| |||||||||||||| | ||| || || ||| | || | || | | | Sbjct 8893 TTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTTCTTGTTACCTAAGGCCAACA 8951 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 | |||||||| || || ||||||| ||||| |||| || | ||| ||||||||||| | Sbjct 8952 ACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAACA 9011 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | | ||| | ||||| || | ||||| || | || ||||||| |||| | Sbjct 9012 AGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAATAA 9071 Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129 | | | | | | | ||| | | | || | |||| ||| | | |||||| | Sbjct 9072 TTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGA---GCAAACAATAAACAAG 9128 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 |||| || || ||||||||||| || || | || || || || ||||| || |||| Sbjct 9129 CAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCTG 9188 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249 ||||||| ||||||||||| | ||| || || || ||||| || | |||||| |||| Sbjct 9189 GCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAATAC 9248 Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCC 39309 | || || ||||| || | || |||| | ||| ||| || ||||||| ||||| Sbjct 9249 CTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAATCC 9308 Query 39310 AATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 39369 | || || ||||| || ||||| |||| ||| | || ||||| | || || ||||||| Sbjct 9309 ATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAATA 9368 Query 39370 A 39370 | Sbjct 9369 A 9369 >seq2 Length=135431 Score = 194 bits (214), Expect = 3e-44 Identities = 374/545 (69%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||||||||| | ||||| || || || ||||| || | || || || Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951 | ||| |||||||||||||| | ||| ||||| |||| | || | |||| Sbjct 59421 TCCATGAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAAT 59480 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 |||| ||| || |||||||||||||| || |||| || ||||||||||| |||||||| Sbjct 59481 AATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAA 59540 Query 39012 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 39071 | ||| | ||||| | | ||| ||| || || ||||| | |||| || Sbjct 59541 GATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGATT 59600 Query 39072 ataattatattattttttgataa--tttata-tttaatatgattcgcatataGTAAACAT 39128 | | || |||| | || || ||||| ||||| || || ||| ||||| Sbjct 59601 TTC--TCAATGATTTCTGGAGAAGGTTTATTCTTTAA----ATACGAGAATAACAAACAG 59654 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 ||| ||||||| || | |||||||| | | || |||||||| ||| || |||||| Sbjct 59655 GCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCT 59714 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAAT 39245 ||||| || || || || || | ||| || |||| ||||| ||| ||| |||| ||| Sbjct 59715 GGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAA--AAT 59771 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 ||||| || || ||||| || | | ||| | || ||| | || ||| | Sbjct 59772 ATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA 59831 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| | ||||||||||| ||||||| | |||| | || |||||||| ||||| ||| Sbjct 59832 ATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTA 59891 Query 39366 AATAA 39370 || || Sbjct 59892 AACAA 59896 >seq65 Length=44577 Score = 187 bits (206), Expect = 5e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || ||||||| || || || || Sbjct 11336 TTCTTACCACCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTG 11395 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || ||||||| || |||| ||||||||||||||||||||||||||||| |||||| Sbjct 11396 TAGTCAGATAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGG 11455 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || ||||| || |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 11456 TCTGGTGGAATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAA 11515 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||| ||||||||||||||||||||| || || | ||| || ||||| Sbjct 11516 GATTCAACTTCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 11571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905125907733600