Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq38 111 1e-19
seq31 105 6e-18
seq65 82.4 6e-11
>seq38
Length=58422
Score = 111 bits (122), Expect = 1e-19
Identities = 370/571 (65%), Gaps = 15/571 (3%)
Strand=Plus/Plus
Query 130538 ATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATG 130597
||||| | ||||| |||||||||||||| || | || || ||||||||||||| ||
Sbjct 21284 ATGTTTAATGATTGAGATTGATCAATAAATGCAGCTCTATCAGCAGCCATGTCGATAATA 21343
Query 130598 GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGC 130657
|| | | || ||||| | |||||||| | || |||| | | || |||
Sbjct 21344 TGCTTTTGTGAGATTTCCCAGACAGTCTTGTACAATGCCTTAATTTCATCAGGAATGTTT 21403
Query 130658 GCAATCGATTGAACGCTACCGTTGTTGGCTATAAT--TTCGTTGCGCATACTTTTATCGT 130715
| | | ||||| ||||||||| || ||||| | | || | ||| | ||
Sbjct 21404 GGCAAAGCTTGAATAGAACCGTTGTTAGCAATAATACTACTTTTC--ATAGCATCATTCC 21461
Query 130716 ACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAG 130775
| | || | | || | ||| || | ||||| ||| | |||||||| || || |
Sbjct 21462 AGACACCCAAATCAACCAAATCCTTCAACAAATATGGATTGACAATTTGAAATTCTCCTG 21521
Query 130776 CCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGA 130835
| | || | ||| ||||||||| ||| | ||||| || | || ||||| || |
Sbjct 21522 CTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGTTCGAAACACTCATTGTTACCCA 21581
Query 130836 ATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGT 130895
| ||||||| ||||| || || ||||| || ||||||| || || | | ||| |
Sbjct 21582 AAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACTAATAAGGAGTTTCTCATACCAT 21641
Query 130896 GCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGT 130955
|| | | | ||| | || ||| |||||||||||||| || ||||| |||
Sbjct 21642 GCTTAGCCAAATTTTGTTTTAATGTATCCCAATCCCATAATTCAGTTGGTTT---TCTGT 21698
Query 130956 TCCACATATCAAATTGTAGTATGCCTTTACTGGC--GGGA--CTGGATTCGAACGATTCG 131011
|||| | |||||| |||| || |||| | ||| |||| |||||| | | ||||
Sbjct 21699 TCCATAAATCAAACTGTAATAAACCTTGAGAGGCAGGGGAGCCTGGAT----AAGTTTCG 21754
Query 131012 TAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTT 131071
||| ||||| | ||||| || |||||| | ||| | | ||||| ||
Sbjct 21755 TAGGCACCTTCTTCTTTAGCCAATTCAACAGAAGCTTCAACAGCAGCATGGTAAATAGTC 21814
Query 131072 TCGGCAATTTGTTTATTTAATTGTTTCGCTT 131102
||| |||||| | ||||||| | | ||||
Sbjct 21815 TCGAAAATTTGAATGTTTAATTCTCTGGCTT 21845
>seq31
Length=62326
Score = 105 bits (116), Expect = 6e-18
Identities = 200/291 (69%), Gaps = 5/291 (2%)
Strand=Plus/Minus
Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707
|| || ||||||||||| || || | |||||| | || |||| |||||||| | | |
Sbjct 1418 ACACGTTTCATAAACAAGTCGGGTATCCATAATCCATAAAACAAATCTCTAGTTCTCATT 1359
Query 131708 TCTTCTGTACCCATAAtttttt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766
||||| | ||| | ||||||| ||| | ||| | || ||||| || ||||||| ||
Sbjct 1358 TCTTC-ATTCCCGTGATTTTTTCTCATTTCTAAGATATCAAAAATATCACCATGCCATGG 1300
Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAAC 131823
||| | ||| | || | ||| ||| || ||| || ||||||| |||| | |
Sbjct 1299 TTCTATATATATGGCAAATGCTCCTGGACGTTTACCCCCACCTTGATCGACATATCTTGC 1240
Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883
| || ||||| || ||||||||||| | || ||||| | | ||||||||||
Sbjct 1239 AGTATTATTGTAAACACGCAACATGGGTACTAACCCGTTTGAACTACCATTGGTGCCAGC 1180
Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934
||| || ||||||| ||| || ||||| || | | || || |||||
Sbjct 1179 AATATACGCACCATTGGATCTAATATTGTGCACATGAATACCTATTCCTCC 1129
>seq65
Length=44577
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGT 27093
||| ||||| || || ||||| || ||||| || |||||||| | | | ||| | |||
Sbjct 11359 CAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTAC-CGT 11417
Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153
|||| | |||||||| || |||| | | ||||| || || || | ||| ||||| |
Sbjct 11418 CTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGT 11477
Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213
| || ||| || | | || | |||||| | | ||||||||||| ||| || |
Sbjct 11478 CTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGG 11537
Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| || || | || || || || ||||||||
Sbjct 11538 TTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 11571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424929780431904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |