Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq38 111 1e-19 seq31 105 6e-18 seq65 82.4 6e-11 >seq38 Length=58422 Score = 111 bits (122), Expect = 1e-19 Identities = 370/571 (65%), Gaps = 15/571 (3%) Strand=Plus/Plus Query 130538 ATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATG 130597 ||||| | ||||| |||||||||||||| || | || || ||||||||||||| || Sbjct 21284 ATGTTTAATGATTGAGATTGATCAATAAATGCAGCTCTATCAGCAGCCATGTCGATAATA 21343 Query 130598 GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGC 130657 || | | || ||||| | |||||||| | || |||| | | || ||| Sbjct 21344 TGCTTTTGTGAGATTTCCCAGACAGTCTTGTACAATGCCTTAATTTCATCAGGAATGTTT 21403 Query 130658 GCAATCGATTGAACGCTACCGTTGTTGGCTATAAT--TTCGTTGCGCATACTTTTATCGT 130715 | | | ||||| ||||||||| || ||||| | | || | ||| | || Sbjct 21404 GGCAAAGCTTGAATAGAACCGTTGTTAGCAATAATACTACTTTTC--ATAGCATCATTCC 21461 Query 130716 ACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAG 130775 | | || | | || | ||| || | ||||| ||| | |||||||| || || | Sbjct 21462 AGACACCCAAATCAACCAAATCCTTCAACAAATATGGATTGACAATTTGAAATTCTCCTG 21521 Query 130776 CCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGA 130835 | | || | ||| ||||||||| ||| | ||||| || | || ||||| || | Sbjct 21522 CTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGTTCGAAACACTCATTGTTACCCA 21581 Query 130836 ATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGT 130895 | ||||||| ||||| || || ||||| || ||||||| || || | | ||| | Sbjct 21582 AAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACTAATAAGGAGTTTCTCATACCAT 21641 Query 130896 GCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGT 130955 || | | | ||| | || ||| |||||||||||||| || ||||| ||| Sbjct 21642 GCTTAGCCAAATTTTGTTTTAATGTATCCCAATCCCATAATTCAGTTGGTTT---TCTGT 21698 Query 130956 TCCACATATCAAATTGTAGTATGCCTTTACTGGC--GGGA--CTGGATTCGAACGATTCG 131011 |||| | |||||| |||| || |||| | ||| |||| |||||| | | |||| Sbjct 21699 TCCATAAATCAAACTGTAATAAACCTTGAGAGGCAGGGGAGCCTGGAT----AAGTTTCG 21754 Query 131012 TAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTT 131071 ||| ||||| | ||||| || |||||| | ||| | | ||||| || Sbjct 21755 TAGGCACCTTCTTCTTTAGCCAATTCAACAGAAGCTTCAACAGCAGCATGGTAAATAGTC 21814 Query 131072 TCGGCAATTTGTTTATTTAATTGTTTCGCTT 131102 ||| |||||| | ||||||| | | |||| Sbjct 21815 TCGAAAATTTGAATGTTTAATTCTCTGGCTT 21845 >seq31 Length=62326 Score = 105 bits (116), Expect = 6e-18 Identities = 200/291 (69%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 || || ||||||||||| || || | |||||| | || |||| |||||||| | | | Sbjct 1418 ACACGTTTCATAAACAAGTCGGGTATCCATAATCCATAAAACAAATCTCTAGTTCTCATT 1359 Query 131708 TCTTCTGTACCCATAAtttttt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766 ||||| | ||| | ||||||| ||| | ||| | || ||||| || ||||||| || Sbjct 1358 TCTTC-ATTCCCGTGATTTTTTCTCATTTCTAAGATATCAAAAATATCACCATGCCATGG 1300 Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAAC 131823 ||| | ||| | || | ||| ||| || ||| || ||||||| |||| | | Sbjct 1299 TTCTATATATATGGCAAATGCTCCTGGACGTTTACCCCCACCTTGATCGACATATCTTGC 1240 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883 | || ||||| || ||||||||||| | || ||||| | | |||||||||| Sbjct 1239 AGTATTATTGTAAACACGCAACATGGGTACTAACCCGTTTGAACTACCATTGGTGCCAGC 1180 Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934 ||| || ||||||| ||| || ||||| || | | || || ||||| Sbjct 1179 AATATACGCACCATTGGATCTAATATTGTGCACATGAATACCTATTCCTCC 1129 >seq65 Length=44577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGT 27093 ||| ||||| || || ||||| || ||||| || |||||||| | | | ||| | ||| Sbjct 11359 CAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTAC-CGT 11417 Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| | |||||||| || |||| | | ||||| || || || | ||| ||||| | Sbjct 11418 CTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGT 11477 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | || ||| || | | || | |||||| | | ||||||||||| ||| || | Sbjct 11478 CTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGG 11537 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || | || || || || |||||||| Sbjct 11538 TTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 11571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929780431904