Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq38 199 5e-46 seq243 114 2e-20 seq209 111 2e-19 seq90 89.7 6e-13 >seq38 Length=58422 Score = 199 bits (220), Expect = 5e-46 Identities = 853/1324 (64%), Gaps = 43/1324 (3%) Strand=Plus/Plus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 |||||||| ||| || ||||| | |||||| ||| ||||| | ||||||||| Sbjct 21500 TTGACAATTTGAAATTCTCCTGCTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGT 21559 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 || || || ||||| |||||||| ||||||| || || || || |||||||| || | Sbjct 21560 TCGAAACACTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACT 21619 Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG--T 110846 || | ||| | | ||| | || | || || | |||||| || | Sbjct 21620 AATAAGGAGTTTCTCATACCATGCTTAGCCAAATTTTGTTTTAATGTATCCCAATCCCAT 21679 Query 110847 AGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAG 110906 | || || ||||||| |||| | | |||||||| | | ||||| || || || | Sbjct 21680 AATTCAG-TTGGTTTTCTGTTCC-ATAAATCAAACTGTAATAAACCTTGAGAGGCAGGGG 21737 Query 110907 AACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCTCGCCTCCAGG 110965 | || | | ||||| |||| ||||| ||| |||||||||| ||| || || | Sbjct 21738 AGCCTGGATAAGTTTCGTAGGCACCTTCTTCTTTAGCCAATTCAACAGAA-GCTTCAACA 21796 Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 111025 | || || || || || || || || || || | || ||||||| | || ||| Sbjct 21797 GCAGCATGGTAAATAGTCTCGAAAATTTGAATGTTTAATTCTCTGGCTTCTTGGGAGTCA 21856 Query 111026 AATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 |||| ||| | ||| ||||| |||| || | |||||||||||||||| |||| Sbjct 21857 AATG-GTAAT--CTCAATTCCATAAAGGCATCAGCCAAACCTTGAACACCCAAAGCAATT 21913 Query 111083 GGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAA 111140 |||||||||| |||||| || |||||| || ||| ||| || ||| || | ||||| Sbjct 21914 GGTCTGTGTCTCATATTTGATCTTTCG-GC-TTCTGGAACTGGGTAATGGTTGCGGTCAA 21971 Query 111141 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA----- 111195 | |||| ||| | || ||| || | ||| |||| ||||| | || ||| | Sbjct 21972 TAACTCTGTTCAAGTTACGGGTGACTACCTTGGTGACATCATGTAACTTATCAAAGTTGT 22031 Query 111196 ATCAA----AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251 | ||| | | || || ||| | ||| | ||| | || || || ||||| | Sbjct 22032 ACCAAGTATTACTTTGA-TCGCTT--TCAACAAATGATGGTAAAGCAATGGAGGCCAAGT 22088 Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311 | |||||||| ||||| | | | || || | |||||| ||||||||||||| Sbjct 22089 TACAAACAGCGACTTCATCTGGAGCAGAATATTCAACAATTTCACAACATAAGTTGGAAG 22148 Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371 ||||| | ||||| ||||||||||| || ||||| || | ||| ||||| | || Sbjct 22149 ATTTAATAATACCCAAGTTCTTTTGGTTGGATTTGTTGTTACATGAATCTTTGTACAACA 22208 Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCT 111430 | | || || ||||| || || || | | | ||||| | ||| || | | | || Sbjct 22209 TAAATGGAGTACCCGTTTCTGTTTGGGCTCCCAAGATAGCGTACCACAATTTTTGGGCCT 22268 Query 111431 GGTACAATGGCGT---TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 | |||| | || | || || ||||| | || || | |||| || Sbjct 22269 TG----ATGGTCTGTCTGCCACGGTTTTCTTTTTCGTATCTGGTATATAATTCTTCGAAT 22324 Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 111547 || ||||| | || | | |||||| |||| | ||| |||| | || ||| | | Sbjct 22325 TCGTCACCGTAAACATCAGCCAAACCTGGGGCCTCATTTGGTGAGAACAAAGTCCAATCA 22384 Query 111548 CCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607 || || || || | |||||||| | |||||||||||| | | || || | |||| Sbjct 22385 CCGTTTTGTTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAAGCTGGGAACAAATCT 22444 Query 111608 CT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 111666 || | | || ||||| | ||| || || || | |||| ||| || | ||| || Sbjct 22445 CTGGCTCTGA-TTTCTTCTTTACCATGATTCTTTCTGATGTCAATGAAATCAAAGATGTC 22503 Query 111667 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGAT 111722 ||||||||| || | || | || | | || |||| | ||| |||||| Sbjct 22504 ACTGTGCCATGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTTG-TTACCACCTTGAT 22562 Query 111723 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 111782 ||||| || || ||| || || || | | ||||||||||||||||| || || Sbjct 22563 CAACATAACGTGCAGTGTTATTGAACACTCTTACCATTGGAATAATACCATTAGAAGTAC 22622 Query 111783 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 111842 |||| || || ||| || | | | | | | ||||| || | ||||| | Sbjct 22623 CATTGGTACCAGCAATGTAAGCACCAGTAGAACGAATGTTGTGGATATGTAAACCAATCC 22682 Query 111843 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902 | || || | ||||| || |||||| | | ||| |||| ||||| | || | Sbjct 22683 CTCCTGCACTTTTTGAAATCAAAGCACACGATTTTAAAGTATCATATATACCTTCAATAG 22742 Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 | || ||||| | || | | |||||| ||||| || ||||||||||||||||||| Sbjct 22743 AATCATCCTTCATAGCAAGCAAGAAGCATGAAGACATTTGGGGTCTTGGTGTACCAGCAT 22802 Query 111963 TGAA 111966 |||| Sbjct 22803 TGAA 22806 >seq243 Length=19219 Score = 114 bits (126), Expect = 2e-20 Identities = 355/536 (66%), Gaps = 39/536 (7%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| ||||||| | |||| | || |||||||| | ||| Sbjct 9128 GCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCT 9187 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| | ||| |||||||| | |||| ||| ||||| || ||||| || Sbjct 9188 GGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCA-AATGAACCACTAAAGAAAAT 9246 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATC-- 122834 ||| || || ||||| |||| | | ||| | | | || ||| |||| Sbjct 9247 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATA----CAAGGCTTCATCATCTT 9302 Query 122835 -AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGG--ATGGC 122891 || |||||| || ||||| | || ||||| | ||||||||| | | |||| ||||| Sbjct 9303 GAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATA--TTGGCAATGGC 9360 Query 122892 TTCAAATAACT-----GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTT 122946 | |||||| | ||||||| || ||| || ||||| | ||||| ||| Sbjct 9361 ATTAAATAAGTAATCGGCTTCTTG--AGG---ATCTTTTATGTAAGTTTCAATTAATAAA 9415 Query 122947 GAATATGTTTCGCCATGAACCATTTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGC 123005 || || ||||| ||||| |||| || ||| | || | |||||||||| || Sbjct 9416 GAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAAC-CGTAGAATGATTTGGC 9474 Query 123006 TTCGCTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 123065 |||| | ||||| ||| || || || | | | | || ||| |||||| ||||| Sbjct 9475 TTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATC 9534 Query 123066 GGACCCAGCAAAGAATGCCAGGATGTACTTTATG-----AATTTCTTTTCATTTTCATTC 123120 || |||| || ||||||| |||| || ||| ||||| ||||||||||| Sbjct 9535 AGAAGCAGCGAAAAATGCCAA----TACTCTAGAGACAAAATATCTTT-CATTTTCATTC 9589 Query 123121 A---GGGTCTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | | | |||||||| || | |||||| |||||| | |||||| || ||||| Sbjct 9590 AATTTGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCA 9645 >seq209 Length=22522 Score = 111 bits (122), Expect = 2e-19 Identities = 110/141 (78%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| |||||||||||||| || || | |||||||||||||||||| | |||||| Sbjct 9044 TATGGCCGTGTTGCACCACGTTCAGGATTGGCTGTGAAGCATGGTATTTCAACTGGTGCT 8985 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 ||||||||||| |||| ||| |||||||| ||||| || | || |||||| | || Sbjct 8984 GGTGTTATTGACGCCGATTATCGTGGTGAAGTGAAAGTAGTCTTATTTAATCACAGTGAT 8925 Query 164724 AAAGACTTTG-AGGTAAAGAA 164743 ||||| || | | ||||||| Sbjct 8924 AAAGATTTCGAAATTAAAGAA 8904 >seq90 Length=39169 Score = 89.7 bits (98), Expect = 6e-13 Identities = 217/325 (67%), Gaps = 9/325 (3%) Strand=Plus/Minus Query 11535 TGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG 11594 ||||||| |||||||| || | |||||||| | |||| ||| | |||||||| | Sbjct 37923 TGTCAAACCCATCCATTTCTACCAACAATTGATTCAATGTTGTTTCACGTTCATCATTGG 37864 Query 11595 C-----TGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAA 11649 | |||||| || | | | ||||| || || | ||||| || ||||||| || Sbjct 37863 CACCAGTGGCATTCCCCTTGGAA--CGTTGTTTACCAATAGCATCGATTTCATCAACAAA 37806 Query 11650 GACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 ||||| | || |||||| || || | | ||| | ||| ||||| || || || Sbjct 37805 CACAATCGAAGGGGCATTTTCACGTGCAGTCTTAAATAAATCACGAACTCTAGATGCTCC 37746 Query 11710 CACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTG 11768 |||||||||||||| || ||||| | || |||| || | | |||||| || || Sbjct 37745 AACACCAACAAACATTTCTACAAATTCTGACCCAGA-AACAGAGTAGAATGGAACTCCTG 37687 Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828 |||||| || | || ||| || | || || || || ||||| ||| | | || Sbjct 37686 CTTCACCAGCAGTTGCCTTGGCAAGTAAAGTTTTACCTGTCCCTGGAGGACCAGATAAAA 37627 Query 11829 GGGCGCCTCGGGGGATCTTGGCACC 11853 || || || ||||| || ||||| Sbjct 37626 TAGCCCCACGAGGGATTTTTGCACC 37602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024997443200