Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq65 132 1e-25
seq88 100 7e-16
>seq65
Length=44577
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | ||| | ||| ||||| ||||||| ||||| || | |||||||| ||
Sbjct 11356 TCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 11415
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | || || ||||| || || | || ||||||||| || ||||||||||| ||
Sbjct 11416 GTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTT 11475
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||| || || ||| ||| || || ||||| || | ||| || ||||| || ||
Sbjct 11476 GTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 11535
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || || || || || | ||| | ||||||
Sbjct 11536 GGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 11571
>seq88
Length=39790
Score = 100 bits (110), Expect = 7e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||||||||||||||| || |||||||| || || ||||||||||| ||||||||
Sbjct 7496 GAAAATTTGACCATCAGTAATGGAAATAACATTAGTTGGAATATAAGCAGAGACATCACC 7437
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
|||| ||||| | ||| || || || || | || ||||||||
Sbjct 7436 ACCTTGGGTTTCAATAACTGGCAAAGCAGTCAAAGAACCACCACC 7392
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081
|||||| ||||||||| ||| | ||||| ||| || |||| || ||||| ||||||| |
Sbjct 7170 CAATACATTGCCCCATTCACTGCTTGTGCTATTGGTGAATGGTTCAGAGACAATGGTAGA 7229
Query 5082 CATGCTTTAATCATCTACGATGATTT 5107
|| |||||||| |||||||||||||
Sbjct 7230 CACGCTTTAATTGTCTACGATGATTT 7255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192517570859048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |