Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq65 132 1e-25 seq88 100 7e-16 >seq65 Length=44577 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||| ||||| ||||||| ||||| || | |||||||| || Sbjct 11356 TCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 11415 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | || || ||||| || || | || ||||||||| || ||||||||||| || Sbjct 11416 GTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTT 11475 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| || || ||| ||| || || ||||| || | ||| || ||||| || || Sbjct 11476 GTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 11535 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || || | ||| | |||||| Sbjct 11536 GGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 11571 >seq88 Length=39790 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || || ||||||||||| |||||||| Sbjct 7496 GAAAATTTGACCATCAGTAATGGAAATAACATTAGTTGGAATATAAGCAGAGACATCACC 7437 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||| | ||| || || || || | || |||||||| Sbjct 7436 ACCTTGGGTTTCAATAACTGGCAAAGCAGTCAAAGAACCACCACC 7392 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 |||||| ||||||||| ||| | ||||| ||| || |||| || ||||| ||||||| | Sbjct 7170 CAATACATTGCCCCATTCACTGCTTGTGCTATTGGTGAATGGTTCAGAGACAATGGTAGA 7229 Query 5082 CATGCTTTAATCATCTACGATGATTT 5107 || |||||||| ||||||||||||| Sbjct 7230 CACGCTTTAATTGTCTACGATGATTT 7255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517570859048