Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq243 331 8e-86 seq2 286 3e-72 >seq243 Length=19219 Score = 331 bits (366), Expect = 8e-86 Identities = 604/880 (69%), Gaps = 6/880 (1%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| ||||||||| || || |||| ||||| |||||||| || || || | || Sbjct 8824 AACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAA 8883 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-TTCACACTTTA 4365 ||||| |||||||| |||||||| |||||||| | ||||| ||| || || | | Sbjct 8884 AGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGTTACCTAA 8943 Query 4366 GAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425 | | |||| ||||| ||||| || ||||| || || || | ||| | | ||||| | Sbjct 8944 GGCCAACAA-CAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCA 9002 Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 | || | || ||| || || || | || || |||||| || | | || |||| Sbjct 9003 TACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTT 9062 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATA 4545 | || || || | || | | ||| ||||||| | ||| || | ||||||||| Sbjct 9063 CAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAATA 9122 Query 4546 AACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605 |||| ||||| ||| || |||||||| ||||||| ||||| ||||| || || || | Sbjct 9123 AACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCA 9182 Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665 | || |||||||||||||||||||| | ||| || |||| |||||||| ||| ||||| Sbjct 9183 ACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGA 9242 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTT 4725 | || ||||| || || ||||| || ||||||| || || || | | |||| Sbjct 9243 AAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTT 9302 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 ||||||||| | ||||||| |||||| || | || || ||||| || || || | Sbjct 9303 GAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCAT 9362 Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 ||||||| | | ||| || |||| || ||||| || |||| || || Sbjct 9363 TAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGG 9422 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 |||| ||||| || ||||| || || || || ||||| || || | ||||| | | Sbjct 9423 TTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAA 9482 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 ||||||||| | | || |||| | ||||||||| || ||||| ||| || | Sbjct 9483 GTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAG 9542 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCC 5022 | ||||| ||||| || ||| | ||| || ||| | || | | || |||| Sbjct 9543 CGAAAAATGCCAATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCC 9602 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||| |||||||||| | ||||| | |||||| | ||||| || || ||||| |||| Sbjct 9603 AGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTT 9662 Query 5083 TTTTGTACATAGACCAAATATCAGGATA-CTGAATCGGAA 5121 | || || | |||||| ||| | || |||| | |||| Sbjct 9663 TCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAA 9702 >seq2 Length=135431 Score = 286 bits (316), Expect = 3e-72 Identities = 595/880 (68%), Gaps = 17/880 (2%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||| || || |||| |||||| |||||||||||||| || | || || |||||| Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTT---AGAGCTACA 4373 ||||| |||||||| |||||||| | ||||||| |||| | ||| | || || Sbjct 59421 TCCATGAAATCAAATGGATTAGTAACATTGTAATACTTTTTA---TTTCCAAAGGCCACT 59477 Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 | ||||| ||||| |||||||| | |||||||| ||| | || || || ||||| | | Sbjct 59478 AATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAAT 59537 Query 4434 AATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 || || || ||||| | | ||| | | || || ||||| || || || || || Sbjct 59538 AAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATG 59597 Query 4494 ATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553 || | | || | ||| ||| |||||||| ||| || || || ||||| ||| Sbjct 59598 ATTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCA 59657 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 |||| || | |||||||||| || ||||| ||| || ||||| || ||||| ||| Sbjct 59658 TAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGC 59717 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || || || || || || | ||| || || || ||||| || ||| || ||||| ||| Sbjct 59718 ATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCT 59777 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733 || ||||| |||||||| || |||| | || | | | ||||| |||||| Sbjct 59778 TCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGAATCCAC 59837 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA---AAT 4790 | | ||||| | ||||||| | | | | || || | | ||||| ||| || Sbjct 59838 CTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACAAA 59897 Query 4791 AATTTACTTTTTTCAAATGGGT-CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 || | || ||| ||||| |||||| || || || |||| | ||| | || Sbjct 59898 AAGTCCGCTTCTTC---TGGGTCCTTGAA-GTATGTTTCGATTAACAACGAATAAGTCTC 59953 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 ||||| || ||||| || |||||||| ||| | | ||| |||| || ||| Sbjct 59954 TGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTATTTG 60013 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 ||||| ||| || |||| || ||||| || || || ||||| || ||| ||||| Sbjct 60014 TACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGCAAA 60073 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTG 5026 || ||||| || | || || || | ||| | || | | || ||||||| Sbjct 60074 GAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGTTCCAGTC 60133 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 || |||||||||| |||| |||| |||||| | ||||||||||| || || ||||| Sbjct 60134 GGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGAGGCCAACGACTTTTT 60193 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATG 5126 ||| | ||| | || ||||||| ||| ||| |||| Sbjct 60194 GTAGAATTGCCATAACTCCGGATACTTAATAGGATATATG 60233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044957437036