Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq243 289 3e-73
seq2 197 1e-45
>seq243
Length=19219
Score = 289 bits (320), Expect = 3e-73
Identities = 604/892 (68%), Gaps = 26/892 (3%)
Strand=Plus/Plus
Query 23158 TTTTAAAAATCTTCATCTAAAGTGAATT--TCA-CTGCTTTAT-CACTATT-----CATA 23208
||||| ||||||||||| || ||||| ||| || |||| | | || || ||||
Sbjct 8765 TTTTAGAAATCTTCATCAAAGGTGAAAGCATCAGCTTCTTTGTTCTCTGTTTTGGCCATA 8824
Query 23209 ACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT 23268
||||| |||||| || || ||| | | |||| || ||||| |||||||| | ||
Sbjct 8825 ACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAA 8884
Query 23269 GATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAG-CTT--TACATGAT 23325
|| || |||||||| |||||||||||||||| | ||| ||||| ||| ||| |
Sbjct 8885 GAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGTTACCT--- 8941
Query 23326 AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTT 23385
|| || || | ||||| || || |||||||| |||||||||||||| | | ||||
Sbjct 8942 AAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTC 9001
Query 23386 ATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCA 23445
||||| | | ||||||| ||||| ||| | ||| |||| ||||||
Sbjct 9002 ATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCT 9061
Query 23446 TCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAAT 23505
|| |||| |||| ||| || ||| | ||| | || |||| |||||||
Sbjct 9062 TCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAAT 9121
Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565
||||| ||||| ||| |||| |||||||| || | |||||| || || || || ||
Sbjct 9122 AAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTC 9181
Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625
|| ||||||||||| |||| ||||| | ||| || || | ||||||||| || ||||
Sbjct 9182 AACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAG 9241
Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685
|||||||| ||||| || |||||||| || | | | |||| | || | || |||
Sbjct 9242 AAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCT 9301
Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745
||||||||| | | ||| | ||| ||| || | ||| ||| | |||| ||
Sbjct 9302 TGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCA 9361
Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805
|| || | || ||||| | |||| |||| || || ||||||| |||| ||
Sbjct 9362 TTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAG 9421
Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865
|||| |||||||| ||||| || || || || || || || || | ||||| |
Sbjct 9422 GTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGA 9481
Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925
| |||||| ||| | | || ||| | ||| ||||| ||||||||||||| ||||
Sbjct 9482 AGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCA 9541
Query 23926 GCAAAGAAAGCAAGAACATATTTT----ATAAAATGTCTTTCA---TCAGTTGATAATTT 23978
|| || || || | ||| | | | ||||| ||||||| ||| | || ||
Sbjct 9542 GCGAAAAATGCCA----ATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTT 9597
Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030
||||| |||| | |||||| ||||| | ||| || | ||||| |||
Sbjct 9598 ATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAA 9649
>seq2
Length=135431
Score = 197 bits (218), Expect = 1e-45
Identities = 295/416 (71%), Gaps = 2/416 (0%)
Strand=Plus/Plus
Query 23240 TTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAG 23299
|||| || ||||| || ||||| | || || ||||||||||| ||||||||||||||||
Sbjct 59383 TTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTTTCCATGAAATCAAATGGATTAG 59442
Query 23300 AAGTATTATA-TACAGCTTTACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCA 23358
| ||| || ||| |||| | || || ||| | | ||| || |||||||||
Sbjct 59443 TAACATTGTAATACTT-TTTATTTCCAAAGGCCACTAATAATCGATCAGCAACAAATTCA 59501
Query 23359 ATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATAT 23418
| ||| || |||||||| ||| | || || || | || |||||||| ||||||
Sbjct 59502 ACATACTGGCACATCAAGTCACAATTCATTCCCAATAAAGATACTGGAAGCGCATCGCTG 59561
Query 23419 AAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTA 23478
|| || ||| ||||| | ||||| || |||| |||| |||| | |||| | |
Sbjct 59562 AAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGATTTTCTCAATGATTTCTGGAGAA 59621
Query 23479 GGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCC 23538
||| || ||||||||| || || ||||| ||| |||| || | ||||| ||
Sbjct 59622 GGTTTATTCTTTAAATACGAGAATAACAAACAGGCATAATCCGTGTGAATCCCTTCGTCT 59681
Query 23539 CTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAA 23598
| | |||||||||||| |||||||| ||||||||||| || || | ||| || | |||
Sbjct 59682 CGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCATCAACCCCCTTTTCTTTAACCAG 59741
Query 23599 AATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654
|| ||||| ||||| || || || || ||||| ||||| || ||||| || ||
Sbjct 59742 AAAATTGCTGCAAACGAACCACTGAAAAATATACCTTCAACGGCAGCAAACGCAAC 59797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521482185408800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |