Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 311 1e-79 seq4 109 7e-19 >seq1 Length=2936865 Score = 311 bits (344), Expect = 1e-79 Identities = 1422/2238 (64%), Gaps = 53/2238 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| | ||| || |||| || || | | ||||||||| || || |||| Sbjct 2415629 GTGAATTGAATAGCAGCAGAAGCGGCTTGTGTTCTCAAATAGTACATACCAGTCTTTAAT 2415688 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || ||||||| ||||| ||||||||||| | ||| | || || ||| Sbjct 2415689 CCTTTCTTCCATCCATAAAAGTGCATACTTGTCAATTTACCCATTGTTGGGTCCTTGATA 2415748 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| || | ||||| |||||| ||||||||| |||| || | ||||| | || Sbjct 2415749 TGGATGTTTAATGATTGTGATTGATCAATGAAGGCTGCCCTATCAGAGGCCATATCGATA 2415808 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || |||||| | |||||||| | || || || | | ||||| || || || | Sbjct 2415809 ATATGCTTTTGAGAGATTTCCCACACTGTCTTGTACAATGCTTTAATTTCATCGGGGATA 2415868 Query 53048 TTTGT---ATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 |||| | || || || ||| | | ||||| ||| |||| || |||| ||| Sbjct 2415869 TTTGGCAAAGCTTGGATGGAACCATTGTTTGAAATAATACTACTCTTCATAGCATCGTTC 2415928 Query 53105 CATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 || ||| | || ||| | | | | | |||||||| | ||| ||||| || Sbjct 2415929 CA-AATACCCAAATCAACCAAATCCTTCAACAAGTATGGATTAACAATTTGGAATTCACC 2415987 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 || ||| ||||| | | ||| || || || || ||||| | | | ||||| || || Sbjct 2415988 AGCCAACACTCTTCTGGAGTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTGTTACC 2416047 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 ||||||||| | || || || || ||||| || |||||||| ||| ||||| | ||| Sbjct 2416048 CAAAATTTGTGATGTGGAAGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTCATACC 2416107 Query 53284 GTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 53341 ||||| | | ||| | ||| | ||||||| ||| | || | || Sbjct 2416108 --ATGTTTGGCAAGTTTTTTTTTCAATTCATCCCAATCCCATAATTCTGTAGGCTTTCTG 2416165 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATC 53397 ||||| | ||| | | |||| | ||||| || || || Sbjct 2416166 TCCCACAAGTCATATTGTAACAAACCTTGGGATGCTGGTG----ATCCTTGGTAGGTTTC 2416221 Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457 || || ||||| | | || | |||| | || || | ||| ||| ||| || || Sbjct 2416222 ATAAGGACCTTCTTCTTGTGCCAATTCAATAGAAGCTTCAACAGCAGCGTGATAGATAGT 2416281 Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG-GATAATTTAAGA 53516 |||||| || | | |||| ||| ||||| || ||| ||| ||| || || | Sbjct 2416282 TTCGAAAATTTGAATGTTTAATTCTCTAGCTTCTTGGGAATCGAATCCGATTCTTAAA-A 2416340 Query 53517 GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576 || || || || || || ||||| || || | | || ||||| |||||| | |||| Sbjct 2416341 CCATGAAGGCATCAGCCAAACCTTGGACTCCCAATGCAATTGGTCTGTGTCTCATGTTAG 2416400 Query 53577 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGA 53636 | | |||||||| || | || |||||||| | ||||| | | | || | ||| | Sbjct 2416401 ATTTCTCAGCTTCAGGGACTGGGTAATAATTCCTGTCTATGACTCTGTTCAAGTTACGAG 2416460 Query 53637 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT-----CAAAT-TGT---CCATCTA 53687 || |||||| ||||| | || ||| ||| | ||| ||| |||||| Sbjct 2416461 TAACAACTTTGGTAACATCATGCAACTTGTCAAAGTTGTACCAAGCGTGTTTACCATCTT 2416520 Query 53688 TT---ACAAAC-ATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCA 53743 | |||||| | | | || ||||| ||||||| ||||| || || || || | | | Sbjct 2416521 GTTCAACAAACGAAGGT-AACGCAATCGATGCCAAGTTACAGACAGCAACTTCGTCTGGA 2416579 Query 53744 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 53803 | | |||| | || ||| || | || | | ||||| | |||||||| | Sbjct 2416580 GCTGAGTATTCGACAATTTCACAACACAAGTTGGAAGATTTGATAATACCTAAATTCTTC 2416639 Query 53804 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863 || || ||| ||||||| ||||||||||| | |||||||| ||||||||||| | Sbjct 2416640 TGGTTGGACTTGGTGTTACAAGCATCCTTATACAACATGAATGGGGTACCAGTTTCGGTT 2416699 Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT- 53922 || | ||| | || | | ||| | ||||||| || | ||| || | | Sbjct 2416700 TGAGCTTCCAAGATGGAGTACCACAACTTTTGAGCCTTGATGGTT--TTTCTACCACGAC 2416757 Query 53923 -TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 ||| ||||| ||| | ||||| |||||||||| || || | | |||||| Sbjct 2416758 CTTCCCTTTCATATTTTTCGTACAACTCAACAAACTCGTCACCATAAGTGTCGGCCAATC 2416817 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | ||| ||||| ||| | | ||| | |||||| || | | | |||| ||||||| Sbjct 2416818 CTGGAGCTTCATTTGGAGAGAACAATGTCCACTCACCATTTTGTTCAACTCTCTTCATAA 2416877 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | | ||| |||||||| | || |||| |||||| | |||| ||| || || || Sbjct 2416878 ACAAATCTGGAATCCACAAGGCCGGGAATAAATCTCTAGCTCTAATTTCTTCCTTACCGT 2416937 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||||| | | || | ||| | | |||||| ||||| ||||| | || | | Sbjct 2416938 GGTTCTTTCTGATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATACAAAG 2416997 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | | ||||| | ||||| || || ||||| | || | || ||||| || ||| Sbjct 2416998 CAAAAGCACCAGGTCTCTTGTTACCACCTTGATCAACATAACGGGCAGTGTTGTTGAAAA 2417057 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 | | | ||| || ||||||||||| || | ||| || || || | ||||| ||| Sbjct 2417058 CACGAACCATAGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGCACCAG 2417117 Query 54282 TGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 ||| |||||| || ||| | ||| || || || || | || || ||||| || | Sbjct 2417118 TGGAACGAATGTTGTGAATGTGCAAACCAATACCACCAGCACTCTTTGAAATTAAAGCAC 2417177 Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401 | |||||| || ||||| || || || ||| ||| || |||| || | |||| Sbjct 2417178 AAGTTTTTAAGGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAAGAAAC 2417237 Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 | |||||||| | ||| || |||||||| || ||||||| | || |||| Sbjct 2417238 AAGATGACATTTGTGGTTTTGGAGTACCAGCATTAAACAAACAAGGAGAACCATGAGTAA 2417297 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT----ATATCCCATTGA 54517 | || ||| || | | || || || || | ||| ||| ||||| | | | Sbjct 2417298 AGTATCTTTGCGACATCAAGTTATAAGTTTCAA----TGACTCTTGGGATATCTCTTCCA 2417353 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577 || || || | || || | ||| | || ||||| ||||||||| | | || || Sbjct 2417354 TGTATACCGATAGCAACTCTCATAATCAAATGCTGTGGTCTTTCAGCTACTTTACCATTG 2417413 Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 54635 || | ||| || ||| |||| |||||||| ||||||||||||||||| ||||| | Sbjct 2417414 ATACGTAACAAATATGATCTTTCTAAAGTTTTGAAACCAAAATAGTTGTAATTGAAA--T 2417471 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-CATG 54694 | || || || | ||| ||||||| | || ||| || | | || | ||| ||| Sbjct 2417472 CACGGTCATAGACAATTGCTGAGTTCAATTCATCAGCATTCTCTTGAATGATATCGTATG 2417531 Query 54695 GTAATAC-TTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 | | | ||||||| || |||| || | ||| || |||| ||| | | || Sbjct 2417532 TT--TCCTTTGAAATCATGGGAGCGTGAAGATTAGTTTCTGGGTTGATATATTCGTACAA 2417589 Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 ||| || || | | | | | ||| | |||| ||| || | ||| ||||| || || Sbjct 2417590 ATCTTTGGAAACCTGAGAATACAATTTAATGGTTTGTTTATGCAAATTGGATACCGCGAT 2417649 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 54873 || || || | | ||||| || || ||| || || ||| || || | || || Sbjct 2417650 CCTTGCTGCCAAGACAGCATAGTCTGGGTGTATGGTGGTCATAGTAGCAGCAGTCTCAGC 2417709 Query 54874 TGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 | || | | ||||| || | ||||| || || | |||| || || || || Sbjct 2417710 AGCCAAATTATCCAACTCAATGGTTGTGACACCTTGGTATACACCAGCAATGACTTTTTG 2417769 Query 54934 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 54993 || || || || || | ||||| | || ||| ||||| |||||| || || | Sbjct 2417770 AGTAATAGCAACTGGTTCAACATGATTTGAGTCTAAACCATAGCATAATCTTTGAACTCT 2417829 Query 54994 AGATGTGATTTTATCAAA 55011 || |||||||| ||||| Sbjct 2417830 AGCAGTGATTTTGTCAAA 2417847 Score = 295 bits (326), Expect = 8e-75 Identities = 614/902 (68%), Gaps = 17/902 (2%) Strand=Plus/Minus Query 23823 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 23882 ||||| | |||||| || |||||| || ||| || | ||||| || ||||| || Sbjct 2540297 TCTTG-GCCATAACACCAGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTC 2540239 Query 23883 TTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTT 23942 ||||| | || || || |||||||| |||||| ||||||| || ||||| || | | || Sbjct 2540238 TTACCAGCCAAGGAAATGTTTTCCATAAAATCGAATGGATTAGTGACATTGTAAACTTTT 2540179 Query 23943 TTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATT 24002 ||| ||||| || | |||||||| || ||||| || | |||| ||| | | Sbjct 2540178 TTATTACCCAAAGCAACCAATAATCTATCAGCAACAAATTCAACATATTGACACATTAAT 2540119 Query 24003 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 24062 | ||||||||| || | | ||||||| | ||| |||||| ||||||| |||||| Sbjct 2540118 TTACAATTCATACCCAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATT 2540059 Query 24063 GAGACCGCGTCTGTTATAATAGATCTTACT--GTTTCTTCACTC-GGTGGATACAATAAA 24119 || || || || ||||| |||| | | | || || ||| || |||| Sbjct 2540058 TCAACAGCTTCAGTAATAAT---TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAA 2540002 Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || ||| | |||||||| || || ||||| ||| ||||| | || |||||||||| Sbjct 2540001 TGGGCAAATAATAAACATGCAAAGTCAGTGTGTAAACCTTCGTCACGACAAATTAATTCG 2539942 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 ||||| || || | ||| ||||| | || | || || | ||| || || || |||||| Sbjct 2539941 TTGGAGAAAGTTAATCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAAT 2539882 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACC 24298 || ||| || || || ||||| || || || || |||| | ||| || || | | Sbjct 2539881 GAACCACTGAAAAAGATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCGGCAAACAAT 2539822 Query 24299 GGCGCTG--TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 | | | | || || ||||| || || |||||||| ||||||||||| | || || Sbjct 2539821 GCCTCGGAATCTTGGATCCATCTGATG-GCCCAATCAGCCTTCTTTTTAATTTGTGGAAT 2539763 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 || || |||||||| || | ||| ||| || ||| || | ||| || ||||| Sbjct 2539762 GGTTTCAATAGCATTGAATAAGAAGTCAGCTTCTTTTGGATCCTTGATATAAGTTTCAAT 2539703 Query 24416 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475 ||| | || |||| || ||||||||||| || ||||| |||||||||||| | Sbjct 2539702 CAATAATGAGTAAGTTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGA 2539643 Query 24476 TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTAT 24535 | |||| || | ||| || ||||| |||| ||| | || || ||||| || || Sbjct 2539642 TTTAGCTTCTGGAATTTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTCTCATTAACAAT 2539583 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA-ATATTTTTCGTCTGGTG 24594 || || || ||||| || ||||| | | ||||| | | || | | || Sbjct 2539582 ACCATCGGATGCGGCAAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGT- 2539524 Query 24595 TTAGTTTAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 ||| ||| | ||||||||| | ||||||| || ||| | |||||| ||||||| | Sbjct 2539523 TTAATTTTTCTCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGA 2539464 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711 |||| ||||| || || || ||||| | |||||| ||||| ||| |||||||| || | Sbjct 2539463 ATGAAGCCTCAGCTTTCTTGTACATTTGCCAGATTTCATGGTATCTGATTGGAAACATGA 2539404 Query 24712 CA 24713 || Sbjct 2539403 CA 2539402 >seq4 Length=1591921 Score = 109 bits (120), Expect = 7e-19 Identities = 286/429 (67%), Gaps = 17/429 (4%) Strand=Plus/Minus Query 52847 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG 52906 || |||||||| ||||| | ||| ||| | |||||||| ||||| || || Sbjct 908467 TAATACATTCCTGTTTTCAAACCCTTTTCCCACGCATAAAAATGACAGCTTGTAAGCTTA 908408 Query 52907 GAATAAC-TCGGAT-CTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTC 52964 || | | |||| |||| |||| |||||||| ||| ||| |||||||| || Sbjct 908407 CC-TATCGTTGGATTCTGC-ATATAAATATTCATGCTTTGCAGTTGGTCGATGAACTTTC 908350 Query 52965 CCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 |||| ||||||||||| | ||| || ||| || || ||||| | ||| |||| | Sbjct 908349 CCCTATCTGCAGCCATATCTATAATATCCTTCTGCTTAAGCTCCCACACCGTTCTATATA 908290 Query 53025 CTCGCTTAATATCTTCTGGAA-----GGTTTGTATTCTGAATAGATCCACCATCTACCAT 53079 | || ||||||| || | | | ||| || |||| || || || || || Sbjct 908289 ATTCTTTGATATCTTTGGGTATCACCGATATGTCTT--GAATCGAGCCGCCGTCCTGAAT 908232 Query 53080 AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAA---CTCTAAGGAG 53136 ||| |||||| | ||| | |||||||| | | | | ||| || | | ||| Sbjct 908231 AATTCTATTCCTCATCGCCGAATTCCATA---TACCCAAATCTGAAAGGTCTTTGATGAG 908175 Query 53137 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 53196 || | || || ||||| || || ||||| | ||||| || ||||| | ||| || Sbjct 908174 ATACTTGTTCACCACTTGGAACTCGCCAGATATTACTCGACGTGTGTATAAATTGGACGT 908115 Query 53197 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256 ||||||||| | | | ||||| ||||||||| |||| ||||| ||||| ||||| || Sbjct 908114 ATACGGTTCAAAACATTCATTGAATCCCAAAATCTGAGATGTTGAAGCAGTAGGCATGGG 908055 Query 53257 TGCCACCAA 53265 ||| | ||| Sbjct 908054 TGCTATCAA 908046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721540627840