Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 188 6e-43 seq4 102 7e-17 seq2 93.3 4e-14 >seq1 Length=2936865 Score = 188 bits (208), Expect = 6e-43 Identities = 419/626 (67%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 57505 CCGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATC 57564 |||| |||||||||||| ||||||| | ||| | | |||||||||||| || ||| | Sbjct 2539365 CCGAAGAACCACTTTTGAAAGAGAACACACGTCGTTATGTCATGTTTCCAATCAGATACC 2539424 Query 57565 CAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAG 57624 || || ||| | |||||||| || || || || || || ||||| | |||||| | | Sbjct 2539425 ATGAAATCTGGCAAATGTACAAGAAAGCTGAGGCTTCATTCTGGACAGCTGAAGAAATCG 2539484 Query 57625 ACCTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTA 57681 | | ||| ||||| |||||| || | || || ||| | |||| Sbjct 2539485 ATTTAGGTAAAGATCTTCATGATTGGAGAGAAAAATTAAACGATAATGAACGTTTCTTTA 2539544 Query 57682 TTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCG 57741 | | | ||||| || || ||||||||||||||||||||||| ||||| ||||| | Sbjct 2539545 TCGGAAGAATCTTGGCTTTCTTTGCCGCATCCGATGGTATTGTTAATGAGAACTTGGTGG 2539604 Query 57742 AAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801 ||| |||||| ||||| ||| | | || || | || || |||||||| ||| | Sbjct 2539605 AAAACTTTTCAGCTGAAGTTCAAATTCCAGAAGCTAAATCTTTCTACGGATTCCAAATTA 2539664 Query 57802 CCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACA 57861 || |||||| | || ||||||| || || || | || || || || | |||| | Sbjct 2539665 TGATGGAAAACATTCACTCAGAAACTTACTCATTATTGATTGAAACTTATATCAAGG--A 2539722 Query 57862 ACGACGAGAAACGTAGAC----TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 | | |||| | ||| | ||||| || || ||||| || || || ||| Sbjct 2539723 TCCAAAAGAA--GCTGACTTCTTATTCAATGCTATTGAAACCATTCCACAAATTAAAAAG 2539780 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| || ||| | |||| |||||| || || ||| ||| |||||||| | Sbjct 2539781 AAGGCTGATTGGGCCATCAGATGGATCCAAGATTCCGAGGCATTGTTTGCCGAGAGATTG 2539840 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || ||||| || || |||||||| || || || ||||| | || || ||| Sbjct 2539841 GTTGCTTTCGCTGCTGTTGAAGGTATCTTTTTCAGTGGTTCATTTGCATCTATTTTCTGG 2539900 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 |||||||| | || ||||||| || | || || |||||| || || | || ||| Sbjct 2539901 TTGAAGAAAAGAGGTTTGATGCCAGGATTAACTTTCTCCAACGAATTAATTTGTCGTGAC 2539960 Query 58098 GAGGGTCTCCATACTGATTTTGCGTG 58123 || ||| | || ||||| ||||| || Sbjct 2539961 GAAGGTTTACACACTGACTTTGCATG 2539986 Score = 165 bits (182), Expect = 7e-36 Identities = 958/1519 (63%), Gaps = 56/1519 (4%) Strand=Plus/Plus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| ||||| || ||| | ||||| ||| |||||||||| |||| || || | || || Sbjct 2416006 GTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTGTTACCCAAAATTTGTGATGTGGA 2416065 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACT 22611 |||||| ||||| || |||| || | |||||||||| || || || | || ||| | Sbjct 2416066 AGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTCATACCATGTTTGGCAAGTTTTTT 2416125 Query 22612 CTTGAG--CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 || | |||| ||| ||||| | || | ||| | ||||||||| || ||| Sbjct 2416126 TTTCAATTCATC--CCAATCCCATAATTCTGTAGGCTTTC---TGTCCCACAAGTCATAT 2416180 Query 22670 TGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA-TCGC 22728 || |||| || | || || |||| ||| ||||| || ||||| | | | | Sbjct 2416181 TGTAACAAACCTTGGGATGCTGGTGATCCTTGGTAGGTTTCATAAGGACCTTCTTCTTGT 2416240 Query 22729 GGCAAGT---TCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTT 22785 | ||| | | | |||| || | || ||| ||| ||||| ||||| |||| | Sbjct 2416241 GCCAATTCAATAGAAGCT----TCAACAGCAGCGTGATAGATAGTTTCGAAAATTTGAAT 2416296 Query 22786 GTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGC 22845 ||| ||||| || | | ||| | || | | | || ||| || || || Sbjct 2416297 GTTTAATTCTCTAGCTTCTTGGGAATCGAATCCGATTCTTAAAACCATGAAGGCATCAGC 2416356 Query 22846 CATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGG 22905 || ||| || || || | | || |||| || | ||| || || | || || || Sbjct 2416357 CAAACCTTGGACTCCCAATGCAATTGGTCTGTGTCTCATGTTAGATTTCTCAGCTTCAGG 2416416 Query 22906 CAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTAT 22965 | || || ||||| || || |||||||||||| | || |||| ||| || | Sbjct 2416417 GACTGGGTAATAATTCCTGTCTATGACTCTGTTCAAGTTACGAGTAACAACTTTGGTAAC 2416476 Query 22966 NNNNNNNNNNNNNTCAAAGTCGTA---AACG------CCCGATTGTACAACAAACTT-GT 23015 ||||||| ||| | || || |||| |||||||| | Sbjct 2416477 ATCATGCAACTTGTCAAAGTTGTACCAAGCGTGTTTACCATCTTGTTCAACAAACGAAGG 2416536 Query 23016 TGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAA 23075 | ||| | ||||| || | || || || || || |||||| | | ||| || |||| Sbjct 2416537 TAACG-CAATCGATGCCAAGTTACAGACAGCAACTTCGTCTGGAGCTGAGTATTCGACAA 2416595 Query 23076 TTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGAT 23135 |||| ||| | ||| | | || || | || ||||| |||||||| || | Sbjct 2416596 TTTCACAACACAAGTTGGAAGATTTGATAATACCTAAATTCTTCTGGTTGGACTTGGTGT 2416655 Query 23136 TGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG 23195 | || | |||||| || | |||| | || || || || ||| || | || | ||| | Sbjct 2416656 TACAAGCATCCTTATACAACATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATGG 2416715 Query 23196 CTCGCCACATAGTCTGAGCGTGAACACGTCG-----CACGTACCTGCCTTCTTCCTCGTA 23250 ||||| | ||||| | | | |||| |||| || ||| || || Sbjct 2416716 AGTACCACAACTTTTGAGCCTTGATGGTTTTTCTACCACG-ACCTTCC--CTT--TCATA 2416770 Query 23251 CTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCAT 23310 |||| ||||||| | |||| ||| |||| ||| |||||||| || || | || | Sbjct 2416771 TTTTTCGTACAACTCAACAAACTCGTCACCATAAGTGTCGGCCAATCCTGGAGCTTCATT 2416830 Query 23311 CGGACACATGAGACTCCACATTGAGTCATTTT---CAACGCGTCTCATAAAAAGATCCGG 23367 ||| | | | ||||| | | |||||| |||| | ||||||| | ||| || Sbjct 2416831 TGGAGAGAACAATGTCCAC--TCAC-CATTTTGTTCAACTCTCTTCATAAACAAATCTGG 2416887 Query 23368 TATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTT 23427 ||||| | || ||| | || | || | | || || || ||| ||||||| | Sbjct 2416888 AATCCACAAGGCCGGGAATAAATCTCTAGCTCTAATTTCTTCCTTACCGTGGTTCTTTCT 2416947 Query 23428 CAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487 | || | || || || | || ||||| || || || || | ||||| || || Sbjct 2416948 GATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATACAAAGCAAAAGCACC 2417007 Query 23488 CGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCAT 23547 |||||||| || || || ||||| || |||||||| ||||||||| | || | | ||| Sbjct 2417008 AGGTCTCTTGTTACCACCTTGATCAACATAACGGGCAGTGTTGTTGAAAACACGAACCAT 2417067 Query 23548 CGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAAC 23607 || | | ||| || || | ||| | || || | | | ||| | | |||| Sbjct 2417068 AGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGCACCAGTGGAACGAAT 2417127 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCC-GCCCGATTTCGATATCATCGCGCATTGTTTCA 23666 |||||||| ||| ||||| || || || || | ||| || || | || || ||| | Sbjct 2417128 GTTGTGAATGTGCAAACCAATACCACCAGCACTCTTT-GAAATTAAAGCACAAGTTTTTA 2417186 Query 23667 GAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACA 23726 ||||| || || || || || || ||||| | || ||||||||||| || |||| Sbjct 2417187 AGGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAAGAAACAAGATGACA 2417246 Query 23727 TTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCAT 23786 |||| | ||| || ||| | || |||| || | || |||||||||| | Sbjct 2417247 TTTGTGGTTTTGGAGTACCAGCATTAAACAAACAAGGAGAACCATGAGTAAAGTATCTTT 2417306 Query 23787 TCGACATTAGATTGTACGTGTCGATGGC----GGCATCAATGTCCTCTCCGTGTATACCG 23842 |||||| | || || || || ||| | || || || || ||| ||||||||| Sbjct 2417307 GCGACATCAAGTTATAAGTTTCAATGACTCTTGGGAT--ATCTC--TTCCATGTATACCG 2417362 Query 23843 ATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTGA 23900 || || || | ||| |||| | || ||||| || | | | | || || || | Sbjct 2417363 ATAGCAACTCTCATAATCAAATGCTGTGGTCTTTCAGCTACTTTA--CCATTGATACGTA 2417420 Query 23901 ACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 ||| |||||| | || | ||||| || |||||||||| || || || ||||| || | Sbjct 2417421 ACAAATATGATCTTTCTAAAGTTTTGAAACCAAAATAGTTGTAATTGAAATCACGGTCAT 2417480 Query 23961 GCACTATGGCCGAATTCAA 23979 || || || || ||||| Sbjct 2417481 AGACAATTGCTGAGTTCAA 2417499 >seq4 Length=1591921 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 22436 TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 ||||||| |||| |||||||||||| |||||||| || | || || ||| ||| Sbjct 908185 TCTTTGATGAGATACTTGTTCACCACTTGGAACTCGCCAGATATTACTCGACGTGTGTAT 908126 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 | ||||| || ||||||| ||| |||||||| ||||| ||||||| || ||||| Sbjct 908125 AAATTGGACGTATACGGTTCAAAACATTCATTGAATCCCAAAATCTGAGATGTTGAAGCA 908066 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCA 22589 || ||||| || || | || || |||||||||| Sbjct 908065 GTAGGCATGGGTGCTATCAAGAGTGAGTTTCTCA 908032 >seq2 Length=2433673 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || ||| | || || || || ||||| | || |||||| | Sbjct 20986 AAAATGCAAATTTTCGTCAAAACTTTAACCGGTAAGACTATCACTTTGGAAGTTGAATCC 21045 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | | || | ||||| | || ||||| || || | || || ||| Sbjct 21046 TCCGACACTATTGACAATGTCAAGTCTAAGATCCAAGACAAAGAGGGTATTCCACCAGAC 21105 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| ||||| || |||||| || || | ||| || Sbjct 21106 CAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACCTTATCCGACTAC 21165 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||||||||| ||| | || |||| | ||| |||| || ||| Sbjct 21166 AACATCCAAAAAGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 21216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766355423360