Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 389 4e-103 seq4 84.2 2e-11 >seq1 Length=2936865 Score = 389 bits (430), Expect = 4e-103 Identities = 1200/1842 (65%), Gaps = 41/1842 (2%) Strand=Plus/Plus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 ||||||| |||| | || || | || |||||||| ||| ||||| ||||| |||| Sbjct 2415629 GTGAATTGAATAGCAGCAGAAGCGGCTTGTGTTCTCAAATAGTACATACCAGTCTTTAAT 2415688 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 || ||||||| ||||| |||||||| |||| ||| | ||| || | | ||| Sbjct 2415689 CCTTTCTTCCATCCATAAAAGTGCATACTTGTCAATTTACCCATTGTTGGGTCCTTGATA 2415748 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 | || | | |||||| |||||| || || || | || || | ||||| || | | Sbjct 2415749 TGGATGTTTAATGATTGTGATTGATCAATGAAGGCTGCCCTATCAGAGGCCATATCGATA 2415808 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA 37035 ||| |||||||| || ||||| || || || || | | ||| || | ||| || | | Sbjct 2415809 ATATGCTTTTGAGAGATTTCCCACACTGTCTTGTACAATGCTTTAATTTCATCGGGGATA 2415868 Query 37036 TCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTC 37092 | | ||| ||| || |||||||| | | | | ||| || |||| || ||| ||| Sbjct 2415869 TTTGGCAAAGCTTGGATGGAACCATTGTTTGAAATAATACTACTCTTCATAGCATCGTTC 2415928 Query 37093 CACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCA 37152 || ||| | | | || |||| | || |||||| |||| || || || ||| Sbjct 2415929 CAAATACCCAAATCAACCAAATCCTTCAACAAGTATGGATTAACAATTTGGAATTCACCA 2415988 Query 37153 GATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTT 37212 | || |||||||| | || || || ||| |||||||||| | ||||| |||| Sbjct 2415989 GCCAACACTCTTCTGGAGTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTGTTACCC 2416048 Query 37213 AATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCA 37272 || ||||| ||||| || || || |||||||| || | | | ||||||| ||| Sbjct 2416049 AAAATTTGTGATGTGGAAGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTCATACCA 2416108 Query 37273 TGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC 37332 ||| | || | | ||||| | ||||| |||||||||||| ||||| || || | | Sbjct 2416109 TGTTTGGCAAGTTTTTTTTTCAATTCATCCCAATCCCATAATTCTGTAGGCTTTCTGTCC 2416168 Query 37333 CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGT 37392 |||| |||||||||| | ||||| ||||| || | | || || |||||||| Sbjct 2416169 CACAAGTCATATTGTAACAAACCTTGGGATGCTGGTGATCCTTGGTAGGTTTCATAAGGA 2416228 Query 37393 CCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAA 37452 || | || || | ||| | || ||| | || || | ||| || ||||||||| Sbjct 2416229 CCTTCTTCTTGTGCCAATTCAATAGAAGCTTCAACAGCAGCGTGATAGATAGTTTCGAAA 2416288 Query 37453 ATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAAC 37512 ||||| || |||||| | | ||||||| | ||||||| | | || | || || Sbjct 2416289 ATTTGAATGTTTAATTCTCTAGCTTCTTGGGAATCGAATCCGATTCTTAAAACCATGAAG 2416348 Query 37513 ACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGAC 37572 ||||||||||||| || || || | | || ||||| ||| || | |||||| | Sbjct 2416349 GCATCAGCCAAACCTTGGACTCCCAATGCAATTGGTCTGTGTCTCATGTTAGATTTCTCA 2416408 Query 37573 GATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGT--- 37629 | ||| ||||| |||||||| | ||||| | | | || | || || ||| Sbjct 2416409 GCTTCAGGGACTGGGTAATAATTCCTGTCTATGACTCTGTTCAAGTT----ACGAGTAAC 2416464 Query 37630 -ATTTTCGTAATTATTCT-CAACTTGTCGAA-----------CATAAATACGTTATTATT 37676 | ||| |||| || | ||||||||| || | | ||| | || || Sbjct 2416465 AACTTTGGTAA-CATCATGCAACTTGTCAAAGTTGTACCAAGCGTGTTTACCATCTTGTT 2416523 Query 37677 -AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC 37735 |||||| | |||| ||| ||| | | ||||| ||||||||||| ||| | | Sbjct 2416524 CAACAAACGAAGGTAACGCAATCGATGCCAAGTTACAGACAGCAACTTCGTCT--GGAGC 2416581 Query 37736 TAA--ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTG 37793 | | ||| | ||| || ||| | || ||| | || | || ||||| | || Sbjct 2416582 TGAGTATTCGACAATTTCACAACACAAGTTGGAAGATTTGATAATACCTAAATTCTTCTG 2416641 Query 37794 ATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTG 37853 ||||| || | ||||||| ||| ||||| | || | || || || ||| |||| Sbjct 2416642 GTTGGACTTGGTGTTACAAGCATCCTTATACAACATGAATGGGGTACCAGTTTCGGTTTG 2416701 Query 37854 AGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--AtttttttC 37911 ||| || | || || | ||| || || || || | | | | || | ||| Sbjct 2416702 AGCTTCCAAGATGGAGTACCACAACTTTTGAGCCTTGATGGTTTTTCTACCACGACCTTC 2416761 Query 37912 TTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA--CATCGCATAATC 37969 |||| |||| | || || | ||| || | | ||||| ||| |||| Sbjct 2416762 --CCTTTCATATTTTTCGTACAACTCAACAAACTCGT--CACCATAAGTGTCGGCCAATC 2416817 Query 37970 CTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAA 38029 ||||| ||| |||| | | | | ||| || ||| || ||| || | | ||||| Sbjct 2416818 CTGGAGCTTCATTTGGAGAGAACAATGTCCACTCACCATTTTGTTCAACTCTCTTCATAA 2416877 Query 38030 ATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTA 38089 | ||||| || | ||| || || | ||||||||| | | |||| |||||| || || Sbjct 2416878 ACAAATCTGGAATCCACAAGGCCGGGAATAAATCTCTAGCTCTAATTTCTTCCTTACCGT 2416937 Query 38090 CATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCG 38149 |||||||| | | ||||| || |||||| |||||||||||| | ||| | | Sbjct 2416938 GGTTCTTTCTGATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATACAAAG 2416997 Query 38150 ACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATA 38209 | || || ||||| || | ||| || |||| || ||| | | ||||| || | | Sbjct 2416998 CAAAAGCACCAGGTCTCTTGTTACCACCTTGATCAACATAACGGGCAGTGTTGTTGAAAA 2417057 Query 38210 TTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCT 38269 | | |||||| | ||||||||||| | |||||| |||| | ||||||| ||| Sbjct 2417058 CACGAACCATAGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGCACCAG 2417117 Query 38270 TAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGC 38329 | | || || || || ||| || || ||||| ||| ||||| |||||||| | Sbjct 2417118 TGGAACGAATGTTGTGAATGTGCAAACCAATACCACCAGCACTCTTTGAAATTAAAGCAC 2417177 Query 38330 ATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAAC 38389 | |||||| || ||| | |||||||| ||| || || || |||| | | |||| Sbjct 2417178 AAGTTTTTAAGGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAAGAAAC 2417237 Query 38390 AACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGA 38449 || |||||||| || |||||| || || ||||| || |||||| |||| | | Sbjct 2417238 AAGATGACATTTGTGGTTTTGGAGTACCAGCATTAAACAAACAAGGAGAACCATGAGTAA 2417297 Query 38450 ACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT-CTATATCACCGCCGTGA 38508 | || ||| ||||| | ||||| ||||| || || || | ||||| | || || Sbjct 2417298 AGTATCTTTGCGACATCAAGTTATAAGTTTCAATGAC-TCTTGGGATATCTCTTCCATGT 2417356 Query 38509 ATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT-CTG 38567 ||||| | || || ||||| | || ||| ||||||||||| || |||| ||| | Sbjct 2417357 ATACCGATAGCAACTCTCATAATCAAATGCTGTGGTCTTTCAGCTACTTTACCATTGATA 2417416 Query 38568 TTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 ||| | ||| ||| ||||||| ||||| | |||||||| Sbjct 2417417 CGTAA-CAAATATGATCTTTCTAAAGTTTTGAAACCAAAATA 2417457 Score = 295 bits (326), Expect = 6e-75 Identities = 598/880 (68%), Gaps = 16/880 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| ||| ||||| ||| || ||||| |||||||| | | || || | Sbjct 2540277 TTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAAATGTTT 2540218 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 |||||||| || |||||| |||||| | ||||||| | ||| || | ||| Sbjct 2540217 TCCATAAAATCGAATGGATTAGTGACATTGTAAACTTTTTTATTACCCAAAGCAACCAAT 2540158 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||| | ||| ||| ||||||| |||||||||||| | | | Sbjct 2540157 AATCTATCAGCAACAAATTCAACATATTGACACATTAATTTACAATTCATACCCAATAAA 2540098 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 || || | |||| | || || || || ||||| || | ||| || ||| | || || Sbjct 2540097 CTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAATAATT 2540038 Query 11579 GACGTTATAACTTCCTTAGAT--GGTGGATGTAATAAATGTTTAAACATTAAACACGCAA 11636 | || | || || ||| ||| |||| |||||| ||| | |||||| |||| Sbjct 2540037 --CTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAATGGGCAAATAATAAACATGCAA 2539980 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 | ||| |||||||||||||| | || |||| ||| || || || |||||||| |||| Sbjct 2539979 AGTCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCCTGGCA 2539920 Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 |||| |||| ||| || | ||| || |||| |||||||||||| || || || || | Sbjct 2539919 TCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACTGAAAAAGATACCTT 2539860 Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCT-TGTTGCTAGATATCCAT 11812 | ||||| || || || || | ||| || || || ||| | || | |||||| Sbjct 2539859 CAACAGCAGCGAAAGCAACCAATCTCTCGGCAAACAATGCCTCGGAATCTTG-GATCCAT 2539801 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA-- 11870 | ||||||||||||| |||||||| | | || ||||| ||||| || |||| Sbjct 2539800 CTGATGGCCCAATCAGCCTTCTTTTTAATTTGTGGAATGGTTTCAATAGCATTGAATAAG 2539741 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 || || |||| | ||| | | ||| || || || ||||| || |||||| Sbjct 2539740 AAGTCA--GCTTCTTTTGGATCCTTGATATAAGTTTCAATCAATAATGAGTAAGTTTCTG 2539683 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 | ||||| |||||||| ||||| ||||| |||||| || || |||| | || | Sbjct 2539682 AGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAATTTGAA 2539623 Query 11991 CATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050 | || | |||| ||||| | || |||||||| ||||||||||| | ||||| | Sbjct 2539622 CTTCAGCTGAAAAGTTTTCCACCAAGTTCTCATTAACAATACCATCGGATGCGGCAAAGA 2539563 Query 12051 ATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC---CCAATCAT 12107 | || | || | |||||| | ||| | | ||||||| || |||||||| Sbjct 2539562 AAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGTTTAATTTTTCTCTCCAATCAT 2539503 Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 | |||||| |||||| | ||||||| | ||||| || ||| | | || || | Sbjct 2539502 GAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTCAGCTTTCTTGT 2539443 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207 |||||| |||||| ||||| || | || || || || || Sbjct 2539442 ACATTTGCCAGATTTCATGGTATCTGATTGGAAACATGAC 2539403 >seq4 Length=1591921 Score = 84.2 bits (92), Expect = 2e-11 Identities = 324/509 (64%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 37996 GACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA 38055 ||||| || || || || || | || ||| || ||||| || | |||||| || Sbjct 907291 GACCAATCATCTCCTGATTTCACTCTTTGCATGAACAAATCTGGAATCCATAACCCATAG 907232 Query 38056 AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCG 38115 || |||||| | |||| | |||||| || || ||| || || | | | || || Sbjct 907231 AACAAATCTCTAGTTCGAAGTTCTTCATTGCCGTGATTTTTCCTCATATTCAAAATGTCA 907172 Query 38116 AATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCT 38175 || || ||||| ||||| ||||| ||||| || | | ||||||||||||||| | || Sbjct 907171 AAGATGTCAGCATGCCAAGGTTCCATATAGATTGCAAATGCTCCTGGTCTTTTTCCTCCG 907112 Query 38176 CCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTA 38235 || || | || ||||| | ||||| || | | | ||||| || |||| ||| | Sbjct 907111 CCTTGGTCAACATATCGTGCGGTGTTGTTGAAAACGCGCAACATGGGAACTACCCCACCA 907052 Query 38236 GATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT 38295 ||| | || || ||| || | | || | |||| ||||| || | Sbjct 907051 GATCTCCCATTAGTACTACTAATGTGCGATCCTTGCGCTCTGATATTGTGAATATGGATC 906992 Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 || || ||||| | | ||| || || || || || | | || | | | || || Sbjct 906991 CCAATCCCACCAGAAGCTTTGGAAATCAAGGCTGCTTCGTGAAGTGTTTGATAGATTCCA 906932 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415 || || |||||||| |||| ||| | ||||| | || |||| ||| | || Sbjct 906931 TCAATGGAATCATCCTTCATTGCTAGCAAGAAACA-----AGATGAGAGGTAATTGTATT 906877 Query 38416 -----CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470 ||||| || |||| || || |||||||||||| |||| |||| | | Sbjct 906876 CACACCCGGCATTGTATAAAGTTGGCAGTGCATGTATGAAATGCTTTTGTGACATTAACT 906817 Query 38471 TATATGTTTCTATTACATCATCTATATCA 38499 |||||||||| ||| | ||||||||| Sbjct 906816 CATATGTTTCTTCCACAGCTTCTATATCA 906788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524753147520