Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14]
8 sequences; 12,659,401 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq1 336 2e-87
>seq1
Length=2936865
Score = 336 bits (372), Expect = 2e-87
Identities = 643/940 (68%), Gaps = 22/940 (2%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAA---------ATAACG 13362
|| ||||| |||| |||| |||| | || | |||||||| | |||||
Sbjct 2540343 TAGAAATCTTCATCAAATGCAAAAGCGTTGGCATCTTTGTTTTCACTCTTGGCCATAACA 2540284
Query 13363 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGAT 13422
|| ||||||||| ||| |||||| |||||||| || || || ||||| ||| ||
Sbjct 2540283 CCAGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAA 2540224
Query 13423 ATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTC 13481
|| ||||||||||||||||||||||| || ||||| | ||||| | | ||| | |
Sbjct 2540223 ATGTTTTCCATAAAATCGAATGGATTAGT-GACATTGTAAACTTTTTTATTACCCAAAGC 2540165
Query 13482 TAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13541
| |||||||||||||||| ||| |||| ||||||| ||||||| | ||||||||||||
Sbjct 2540164 AACCAATAATCTATCAGCAACAAATTCAACATATTGACACATTAATTTACAATTCATACC 2540105
Query 13542 TATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTT 13601
| || | || || | || ||| || ||||||||||| || ||||| || |
Sbjct 2540104 CAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGT 2540045
Query 13602 TATAATAATCTTAATAATGTCATTAGAA--GGAGGATATTTTAGATGTTTAAAAATTAAA 13659
||||| | | || || | || || || || || || ||| ||| | ||||
Sbjct 2540044 AATAATTCTTTCAACGATCT--TTGGATCTGGTCTATGTTGTAAATGGGCAAATAATAAA 2539987
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| ||||| ||| || | || || || | || ||| | |||||| || || ||||||
Sbjct 2539986 CATGCAAAGTCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAAT 2539927
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779
||||||||||| |||| ||| || ||||| || || | || ||||| || || ||
Sbjct 2539926 CCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACTGAAAAAG 2539867
Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839
|| || ||||| ||||| || || | | || || ||||| |||| | | |
Sbjct 2539866 ATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCGGCAAACAATGCCTCGGAATCTTGG 2539807
Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899
|||||| | | ||||| |||| || |||||||| || ||||| || ||||||
Sbjct 2539806 ATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGTGGAATGGTTTCAATAGCATTG 2539747
Query 13900 AATAA-ATGT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957
||||| | || ||||| || | |||| || || || ||||| | ||| ||
Sbjct 2539746 AATAAGAAGTCAGCTTCTTTTGGATCCTTG--ATATAAGTTTCAATCAATAATGAGTAAG 2539689
Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017
|||| ||||| |||||||| || || || || || || ||| || |||||||||
Sbjct 2539688 TTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAA 2539629
Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077
||| || || | |||| |||| ||||||| ||||||||||||||||| || |
Sbjct 2539628 TTTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTCTCATTAACAATACCATCGGATGCGG 2539569
Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT---TCC 14134
|||| || ||||| || || |||||| | | || | || ||| | ||||| |||
Sbjct 2539568 CAAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGTTTAATTTTTCTCTCC 2539509
Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194
|||| | ||| ||| | ||| | ||| ||| ||||||| || ||| ||||||
Sbjct 2539508 AATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTCAGCTT 2539449
Query 14195 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234
| || |||||| ||| ||||| | ||| || |||||
Sbjct 2539448 TCTTGTACATTTGCCAGATTTCATGGTATCTGATTGGAAA 2539409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478588752141120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |