Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 219 1e-51 seq2 140 7e-28 >seq1 Length=2936865 Score = 219 bits (242), Expect = 1e-51 Identities = 622/938 (66%), Gaps = 37/938 (4%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGC-ATGGTGA 268731 ||||| ||||| | | ||| || | | | ||| || |||||||| ||| | ||| Sbjct 2539370 GAACCACTTTTGAAAGAGAACACACGTCGTTATGTCATGTTTCCAAT-CAGATACCATGA 2539428 Query 268732 TATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCT 268791 || ||| |||||||| | || | ||||| || ||||| | |||||| | ||| | Sbjct 2539429 AATCTGGCAAATGTACAAGAAAGCTGAGGCTTCATTCTGGACAGCTGAAGAAATCGATTT 2539488 Query 268792 GTCTTATGA-CTTAATAGATTGGA---AAAATTTAAAACCAGAA-GAAAGAAGATTTATA 268846 | | || ||| || ||||||| |||| ||||| | | || ||| | ||||| Sbjct 2539489 AGGTAAAGATCTTCAT-GATTGGAGAGAAAAATTAAA-CGATAATGAACGTTTCTTTATC 2539546 Query 268847 TCTTATATTCTTGCGTTT-TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGA 268905 | | ||||| ||| ||||| | |||||||| ||||| || || | || || Sbjct 2539547 GGA-AGAATCTTGGCTTTCTTTGCCGCATCCGATGGTATTGTTAATGAGAACTTGGTGGA 2539605 Query 268906 GAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGC 268965 || || | || || || ||||| ||||| | || ||| ||||||||||| || Sbjct 2539606 AAACTTTTCAGCTGAAGTTCAAATTCCAGAAGCTAAATCTTTCTACGGATTCCAAATTAT 2539665 Query 268966 TATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAA 269025 || ||||| ||||| ||||| | ||| |||| || || |||||||| | ||| Sbjct 2539666 GATGGAAAACATTCACTCAGAAACTTACTCATTATTGATTGAAACTTATATCAAGGAT-- 2539723 Query 269026 CAACGAAAAGAAAA-GACTATTT--TC--TTCTATGAGAACTATGGACTGTGTGAGaaaa 269080 | ||||||| |||| || || | |||| ||| || | | ||| Sbjct 2539724 ---CCAAAAGAAGCTGACTTCTTATTCAATGCTATTGAAACCATTCCACAAATTAAAAAG 2539780 Query 269081 aaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCC-----TTACGGAGAAAGGT 269135 || |||| ||||| | | |||||| | ||| || | | || | |||| | | Sbjct 2539781 AAGGCTGATTGGGCCATCAGATGGATCCAAGATTCCGAGGCATTGTTTGCCGAGAGA--T 2539838 Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 | |||||||| || ||||| |||||||| || || || || ||||| |||| || | Sbjct 2539839 TGGTTGCTTTCGCTGCTGTTGAAGGTATCTTTTTCAGTGGTTCATTTGCATCTATTTTCT 2539898 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 |||||||||||||||| | |||||||||||||||||||| |||||||| || | | | Sbjct 2539899 GGTTGAAGAAAAGAGGTTTGATGCCAGGATTAACTTTCTCCAACGAATTAATTTGTCGTG 2539958 Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAAC 269315 |||||||||||||| ||||| || |||||||||||| | ||| | ||| | || Sbjct 2539959 ACGAAGGTTTACACACTGACTTTGCATGTTTATTATTTGCCCATT---TACAACATAGAC 2540015 Query 269316 CTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTC 269375 | || | | | || | |||||| | ||||||| | |||| |||||| Sbjct 2540016 CAGATCCAAAGATCGTTGAAAGAATTATTACTGAAGCTGTTGAAATTGAAAAAGAATTCT 2540075 Query 269376 TAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATA 269435 | || || ||| || | | | | | ||||||||| | |||| ||| ||||| Sbjct 2540076 TTACTGATGCTTTACCAGTTAGTTTATTGGGTATGAATTGTAAATTAATGTGTCAATATG 2540135 Query 269436 TTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAA---TATAACG 269492 || | || || |||||||||| |||| |||| || || ||||||| || || | Sbjct 2540136 TTGAATTTGTTGCTGATAGATTATTGGTTGCTTTGGG---TAATAAAAAAGTTTACAATG 2540192 Query 269493 TTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCG 269552 | ||||| || ||||||||| || || || || | |||||| | |||||||| | Sbjct 2540193 TCACTAATCCATTCGATTTTATGGAAAACATTTCCTTGGCTGGTAAGACCAATTTCTTTG 2540252 Query 269553 AGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATG 269590 | ||| | || | | ||||| ||| ||||| ||| Sbjct 2540253 AAAAGAGAGTTTCTGATTATCAAAAAGCTGGTGTTATG 2540290 >seq2 Length=2433673 Score = 140 bits (154), Expect = 7e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||||||||| || || || ||||| |||| |||||||||||||||| |||| Sbjct 21191 TGCAAAGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTACCGTCTTCTAATTGT 21132 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| || || || || || ||||| || || ||||| Sbjct 21131 TTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCCTCTTTGTCTTGGATCTTA 21072 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || ||| | ||| || || | || ||||||||||| || Sbjct 21071 GACTTGACATTGTCAATAGTGTCGGAGGATTCAACTTCCAAAGTGATAGTCTTACCGGTT 21012 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | ||||| || || || ||||||||| Sbjct 21011 AAAGTTTTGACGAAAATTTGCATTTTG 20985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398281981664