Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 seq4 89.7 6e-13 >seq1 Length=2936865 Score = 154 bits (170), Expect = 2e-32 Identities = 281/406 (69%), Gaps = 18/406 (4%) Strand=Plus/Plus Query 7009 TAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTAT-----ATCAGATG 7063 ||||||||||| |||||||||||||||||||| ||| ||| || ||||| | Sbjct 1312711 TAAAATTGACAAAATACATGACATGGAGGTAAT---GCC--ATCAATGGGAAATCAGGAG 1312765 Query 7064 GATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAA 7123 |||||||||| | ||| | ||| | || ||||| ||||| || || ||||| | || | Sbjct 1312766 GATTCCAAGCTGACATGATAATTCTTCGATCATACGGATTAGTCTTCAATTTCTTGATTA 1312825 Query 7124 TTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAG 7183 |||||||||||| | || || || || | |||| ||||| | ||| | || Sbjct 1312826 CATCTTGTAATTGATCAAATCCTTGGCCGGTGTAGTCGGTATCACAATCTTGATATTCAG 1312885 Query 7184 CTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGAT 7243 | ||||||||||||||||| || ||||||| || || ||||||||||| ||||||| Sbjct 1312886 CACCAAAATGTCTCCATTGGAAACCATAAACTGGTCCCAAATCACCTTCACGACGATGAG 1312945 Query 7244 TAAATCCTAATCGATTTAAATTAGATTTT----GATCCATAAGCATCCCAAATATGTACA 7299 | ||||| || | | | | | ||| | || |||| | | ||||| || | || Sbjct 1312946 TTAATCCCAA--GTTGTCCA-AAAATTCTCGCAGA-CCATTACCTTCCCATATCTTGACC 1313001 Query 7300 GAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCT 7359 ||||| ||| | | || |||||||| | ||||| |||||||| | Sbjct 1313002 CCTTTTTCACTCAAAATCTTGGCATCGGTAGATCCAGCTACAAACCACAAAAGTTCGTGA 1313061 Query 7360 ACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATG 7405 | ||| || |||||| || ||| ||||||| ||||||||||| Sbjct 1313062 ATTATGCCTTTGGAAAACACTCGTTTAGTAGTGAGTAAAGGGAATG 1313107 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6829 ATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATA 6888 |||||||| || || | ||||||||| ||||| ||||||||||| || || | |||| Sbjct 1312468 ATATGATCCAAGTATACATGAGCATCACCTAGGGTATGAATAAACTCTCCGCAGTCCATA 1312527 Query 6889 TCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACA 6948 || || | || ||||| | | || | ||||||||| || || | ||| || || ||| Sbjct 1312528 TCTACCACATGTGCAATCATCTTGGTAAGTAATGCATAGGATGCAATATTGAATGGGACA 1312587 Query 6949 CCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAA 6992 || |||||||| || ||||||||||| || ||| ||||| Sbjct 1312588 CCCAATCCCATGTCACACGATCTTTGATATAATAAACAGGATAA 1312631 >seq4 Length=1591921 Score = 89.7 bits (98), Expect = 6e-13 Identities = 314/486 (65%), Gaps = 21/486 (4%) Strand=Plus/Minus Query 164484 CGAAATAATaaaaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCC 164543 |||||| | |||| || | || || ||| ||||| | ||||| |||||||||| Sbjct 523711 CGAAATTGCAGAAAAGTTGGACTACAAGCATTGTAAAGGTTTGTTATTGTATGGACCTCC 523652 Query 164544 TGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACC 164600 |||| |||||||| || || || || | |||| || | || ||| | || | Sbjct 523651 TGGTACAGGTAAAACCTTGATTGCACG-TAAATTGTCGAAAATGTTGAATGGTAAGGAAC 523593 Query 164601 CGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAA 164660 | || || || |||||||| ||| | |||| || ||||| |||| || || | || Sbjct 523592 CA--AAGATAGTCAATGGTCCAGAAATGTTGAGTAAGTATGTTGGTGCATCTGAGGAGAA 523535 Query 164661 TGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAA 164720 || | || ||||| |||| ||||||| ||| | || |||| | | Sbjct 523534 CATTCGTAACTTGTTCAAGGATGCTGAAGCTGAATATAAACTCAAAGGTGAGGACTCCGA 523475 Query 164721 ATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT----GATA 164776 || || |||||| | || ||||| | ||| | | | |||| || | ||| || | Sbjct 523474 CTTGCACGTTATTATCTTCGATGAATTGGATTCCGTATTCAAACAAAGAGGTTCAGGAAA 523415 Query 164777 AT--------ATTATTCATGATG-CAGTG--GTTAATCAGTTGCTTTCTAAAATAGATGG 164825 | | | | || || || || || || || ||| | || ||||| || || Sbjct 523414 AAGCGACGGAACTGGTGTTGGTGACAATGTAGTGAACCAATTGTTATCAAAAATGGACGG 523355 Query 164826 TGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGA 164885 ||| || ||||| ||||| | || | ||||||||||| ||| |||||| ||||| Sbjct 523354 TGTTGATCAGTTAAACAATATCCTTGTTATTGGTATGACCAATAGACTTGATTTGATTGA 523295 Query 164886 TGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAA 164945 | ||| || || |||||||| |||| ||| | | || ||||| | ||||| || | Sbjct 523294 TACTGCCTTGTTGAGACCTGGTAGATTTGAAATTCAGATTGAAATTGCTTTACCGGATGA 523235 Query 164946 AGAAGG 164951 | |||| Sbjct 523234 AAAAGG 523229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871940412800