Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 389 4e-103 seq4 113 5e-20 >seq1 Length=2936865 Score = 389 bits (430), Expect = 4e-103 Identities = 640/915 (70%), Gaps = 15/915 (2%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || | |||||| |||||||||||||| || || || | || || || Sbjct 2540278 TTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAAATGTT 2540219 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||||||| |||||||| | ||||| || | |||||| || || | | | Sbjct 2540218 TTCCATAAAATCGAATGGATTAGTGACATTGTAAACTTTTTTATTACCCAAAGCAACCAA 2540159 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || |||||| || ||||||| || |||| ||| | | ||||||||| || | ||| Sbjct 2540158 TAATCTATCAGCAACAAATTCAACATATTGACACATTAATTTACAATTCATACCCAATAA 2540099 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 |||| |||| ||||| |||| ||||||| ||| || | || || || | ||||| Sbjct 2540098 ACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAATAAT 2540039 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | |||| | | | || || | | | | ||| ||| | ||||||||||| Sbjct 2540038 TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAATGGGCAAATAATAAACATGCAAA 2539979 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||| |||| || ||||| | || || ||||| || || || ||||| || ||||| Sbjct 2539978 GTCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCCTGGCAT 2539919 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 || |||||||| || |||||||| ||||| |||||||| ||| || || |||||||| Sbjct 2539918 CAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACTGAAAAAGATACCTTC 2539859 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATT 19147 || || || |||||||| | ||| || || ||| | || || || || |||||| Sbjct 2539858 AACAGCAGCGAAAGCAACCAATCTCTCGGCA-AACAATGCCTCGGAATCTTGGATCCATC 2539800 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 | | |||||||||||||||||||| | ||| || || || |||| ||| |||| | Sbjct 2539799 TGATGGCCCAATCAGCCTTCTTTTTAATTTGTGGAATGGTTTCAATAGCATTGAATA-AG 2539741 Query 19208 ACATACGC-TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | | || || | || ||| || | ||| | || |||||||| ||| ||||||| Sbjct 2539740 AAGTCAGCTTCTTTTGGATCCTTGATATAAGTTTCAATCAATAATGAGTAAGTTTCTGAG 2539681 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 ||||| ||||| || || || |||||||| ||| || | ||||||| || || ||| Sbjct 2539680 TGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAATTTGAACT 2539621 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 ||| |||| |||| ||||| || |||||||| || ||||| || ||||| || Sbjct 2539620 TCAGCTGAAAAGTTTTCCACCAAGTTCTCATTAACAATACCATCGGATGCGGCAAAGAAA 2539561 Query 19387 GCTAATACATGTT----TAATAAAATGTTTTTCATCTGAGGTTAATGTAT---TCCAATC 19439 || || | | || ||| ||| ||| | ||| | ||||| | | ||||||| Sbjct 2539560 GCCAAGA-TTCTTCCGATAAAGAAACGTTCATTATC---GTTTAATTTTTCTCTCCAATC 2539505 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 || || ||||||| |||||| | ||||||| ||||||| || |||||||| ||||| || Sbjct 2539504 ATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTCAGCTTTCTT 2539445 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 ||||| | ||| || ||| | ||| || ||||| || ||| | | | | | || || Sbjct 2539444 GTACATTTGCCAGATTTCATGGTATCTGATTGGAAACATGACATAACGACGTGTGTTCTC 2539385 Query 19560 TTTAAGAATAGGTTC 19574 ||| | || ||||| Sbjct 2539384 TTTCAAAAGTGGTTC 2539370 Score = 325 bits (360), Expect = 4e-84 Identities = 1169/1827 (64%), Gaps = 39/1827 (2%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| ||||| ||||||||||||||||| ||| |||||||||| || ||||| Sbjct 2415655 TTGTGTTCTCAAATAGTACATACCAGTCTTTAATCCTTTCTTCCATCCATAAAAGTGCAT 2415714 Query 47069 ACTAGTTAATTTAGA-ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGAT 47127 ||| || |||||| || | ||| || | |||| || || | ||||| |||| Sbjct 2415715 ACTTGTCAATTTACCCATTGTTGGGTCCTTGA-TATGGATGTTTAATGATTGTGATTGAT 2415773 Query 47128 CAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATA 47187 |||| || || | ||||||| |||||||| | |||| | |||| | || ||||| | Sbjct 2415774 CAATGAAGGCTGCCCTATCAGAGGCCATATCGATAATATGCTTTTGAGAGATTTCCCACA 2415833 Query 47188 CTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGATCCTC 47244 |||| || || | | |||||| || || |||| ||| | | ||| || || || Sbjct 2415834 CTGTCTTGTACAATGCTTTAATTTCATCGGGGATATTTGGCAAAGCTTGGATGGAACCAT 2415893 Query 47245 Cgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaatgttt 47304 |||| ||||| | | || | ||| ||||| ||| || | Sbjct 2415894 TGTTTGAAATAATACTACTCTTCATAGCATCGTTCCAAATACCCAAATCAACCAAATCCT 2415953 Query 47305 ttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATAT 47364 | || | | |||||||||||||| ||||| |||| | ||||| | | || || | Sbjct 2415954 TCAACAAGTATGGATTAACAATTTGGAATTCACCAGCCAACACTCTTCTGGAGTAGATGT 2416013 Query 47365 TACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAG 47424 | || |||||||| | | ||||||| || || |||||||| | || || || || | Sbjct 2416014 TCGAAGTGTATGGTTCAAAACATTCATTGTTACCCAAAATTTGTGATGTGGAAGCGGTTG 2416073 Query 47425 GCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNN 47484 |||| | || || || || ||||| | |||| ||| | | Sbjct 2416074 GCATTGGAGCCACCAACAAAGAGTTTCTCATACCATGTTTGGCAAGTTTTTTTTTCAATT 2416133 Query 47485 GTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTT 47544 | ||||||||| | |||| || | ||| || |||||||| | | |||| Sbjct 2416134 CATCCCAATCCCATAATTCTGTAGGCTTTCTGTCCCACAAGTCATATTGTAACAAACCTT 2416193 Query 47545 TACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAAC 47604 | || || || | || |||| ||||||||| | | || || | |||| | Sbjct 2416194 GGGATGCTGGTGATCCTTGGTAGGTTTCATAAGGACCTTCTTCTTGTGCCAATTCAATAG 2416253 Query 47605 TTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC-CTTGCT 47663 ||||| | ||| | ||| || ||||| || |||| ||||||| |||| || ||| Sbjct 2416254 AAGCTTCAACAGCAGCGTGATAGATAGTTTCGAAAATTTGAATGTTTA-ATTCTCTAGCT 2416312 Query 47664 TCTGATGATTCAAAAG-GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACC 47722 ||| || || || ||| || | ||| ||||| ||||| || || Sbjct 2416313 TCTTGGGAATCGAATCCGAT-TCTTAAAACCATGAAGGCATCAGCCAAACCTTGGACTCC 2416371 Query 47723 AATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTT 47782 | |||||||||| || | | ||||| ||||||||| || | ||| || | || Sbjct 2416372 CAATGCAATTGGTCTGTGTCTCATGTTAGATTTCTCAGCTTCAGGGACTGGGTAATAATT 2416431 Query 47783 TATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATT 47842 | ||||| | | | || | || || || || | Sbjct 2416432 CCTGTCTATGACTCTGTTCAAGTTACGAGTAACAACTTTGGTAACATCATGCAACTTGTC 2416491 Query 47843 AAAAT-----CAAACTTGTT----AT-TTAT--AACAAACCTATTAAGTGCTATAGATGC 47890 ||| | ||| | |||| || || | ||||||| | | || || ||||| Sbjct 2416492 AAAGTTGTACCAAGCGTGTTTACCATCTTGTTCAACAAACGAAGGTAACGCAATCGATGC 2416551 Query 47891 TAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950 | ||||| ||||| || || | |||| | |||| | |||||| ||| | || Sbjct 2416552 CAAGTTACAGACAGCAACTTCGTCTGGAGCTGAGTATTCGACAATTTCACAACACAAGTT 2416611 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTA 48010 | |||||||| |||| ||||| | || || ||||||| || ||||| || Sbjct 2416612 GGAAGATTTGATAATACCTAAATTCTTCTGGTTGGACTTGGTGTTACAAGCATCCTTATA 2416671 Query 48011 AAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT 48070 | ||| || || || |||||||| | |||| ||| | ||| || | ||| | | Sbjct 2416672 CAACATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATGGAGTACCACAACTTTTG 2416731 Query 48071 AGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130 |||||| || |||| | | || ||| ||||| || |||| |||| Sbjct 2416732 AGCCTTGATGGTTTTTCTACCACGACCTTCCCTTTCATATTTTTCGTACAACTCAACAAA 2416791 Query 48131 TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATC 48190 || || ||||| | | || || ||| |||||| ||| | | ||||| ||| Sbjct 2416792 CTCGTCACCATAAGTGTCGGCCAATCCTGGAGCTTCATTTGGAGAGAACAATGTCCA--- 2416848 Query 48191 CTCATCATTTTTT---ACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAA 48247 |||| |||||| | ||||| ||||||| | |||||| ||||| | || ||||| Sbjct 2416849 CTCACCATTTTGTTCAACTCTCTTCATAAACAAATCTGGAATCCACAAGGCCGGGAATAA 2416908 Query 48248 ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTAT 48307 ||| |||| ||| | |||||| || || ||| || | | |||| || || | || Sbjct 2416909 ATCTCTAGCTCTAATTTCTTCCTTACCGTGGTTCTTTCTGATCTCAATGAAATCAAAGAT 2416968 Query 48308 ATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTG 48367 |||| ||||||||||| | ||| | || | |||| |||| || ||||| ||||| Sbjct 2416969 ATCACTGTGCCATGGTTCAAGATACAAAGCAAAAGCACCAGGTCTCTTGTTACCACCTTG 2417028 Query 48368 ATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATAT 48427 ||| | ||| | |||||| ||||| |||| | | ||| |||| ||||||||| || | Sbjct 2417029 ATCAACATAACGGGCAGTGTTGTTGAAAACACGAACCATAGGGATAATACCATTAGAAGT 2417088 Query 48428 ACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTA 48486 ||| || || || | ||||||| ||| | | | || || ||| || || ||| | Sbjct 2417089 ACCGTTTGTACCAGCAATATAAGCACCAGTGGAACGAATGTTGTGAATGTGCAA-ACCAA 2417147 Query 48487 TACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTA 48546 ||||||| || | || || |||| |||||| ||| | ||| |||||||| ||||| | Sbjct 2417148 TACCACCAGCACTCTTTGAAATTAAAGCACAAGTTTTTAAGGTGTCATAAATACCTTCAA 2417207 Query 48547 TACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTG 48606 || ||| ||| |||| | | |||||| |||||||| || | ||| || | Sbjct 2417208 TAGAATCTTCTTTCATTGCAACCAAGAAACAAGATGACATTTGTGGTTTTGGAGTACCAG 2417267 Query 48607 AATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTT 48666 |||||| || ||||| ||||| |||| || | | || | ||| ||||| |||| Sbjct 2417268 CATTAAACAAACAAGGAGAACCATGAGTAAAGTATCTTTGCGACATCAAGTTATAAGTTT 2417327 Query 48667 CAATAACAGAATCT----ATATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722 |||| || ||| ||||| | | ||||||||| |||| || | ||| | || | Sbjct 2417328 CAAT----GACTCTTGGGATATCTCTTCCATGTATACCGATAGCAACTCTCATAATCAAA 2417383 Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782 | || ||||||||| | | ||| ||| || || | ||||||| |||| || ||| Sbjct 2417384 TGCTGTGGTCTTTCAGCTACTTTACCATTGATACGTAACAAATATGATCTTTCTAAAGTT 2417443 Query 48783 TTAAAACCAAAATAGTTGTA--TGAAA 48807 || ||||||||||||||||| ||||| Sbjct 2417444 TTGAAACCAAAATAGTTGTAATTGAAA 2417470 >seq4 Length=1591921 Score = 113 bits (124), Expect = 5e-20 Identities = 185/261 (71%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 48180 AATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCT 48239 || |||||||| || | ||| ||||| ||| || | |||||| ||||| | | | Sbjct 907294 AACGACCAATCATCTCCTGATTTCACTCTTTGCATGAACAAATCTGGAATCCATA-ACCC 907236 Query 48240 ATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCC---ACTATTCCTTTTAAGTTCAAG 48295 ||| || ||||| ||||||| |||||||||||||| | | ||||| || ||||| Sbjct 907235 ATAGAACAAATCTCTAGTTCGAAGTTCTTCATTGCCGTGATTTTTCCTCATA--TTCAA- 907179 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || ||| | || ||||||||||| ||||| | ||| ||||| | | | ||||||| ||| Sbjct 907178 AATGTCAAAGATGTCAGCATGCCAAGGTTCCATATAGATTGCAAATGCTCCTGGTCTTTT 907119 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || ||||| || | ||||| || || ||||| |||| | ||||| || || | Sbjct 907118 TCCTCCGCCTTGGTCAACATATCGTGCGGTGTTGTTGAAAACGCGCAACATGGGAACTAC 907059 Query 48416 ACCATTTGATATACCATTGGT 48436 ||| ||| | ||||| || Sbjct 907058 CCCACCAGATCTCCCATTAGT 907038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108743789120