Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 253 3e-62 seq2 122 1e-22 >seq1 Length=2936865 Score = 253 bits (280), Expect = 3e-62 Identities = 582/863 (67%), Gaps = 36/863 (4%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| || || ||| | || || |||||||| ||||| || |||| || || Sbjct 2540281 AGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAAAT 2540222 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTA----ATT 17975 | ||||||||| |||||||||||| || ||| ||||| ||||| | Sbjct 2540221 GTTTTCCATAAAATCGAATGGATTAGTGACATTGTAAACTTTTT----TATTACCCAAAG 2540166 Query 17976 CGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATAC 18035 | ||||||||||| || |||||||| |||||||| |||| || | |||||||||| Sbjct 2540165 CAACCAATAATCTATCAGCAACAAATTCAACATATTGACACATTAATTTACAATTCATAC 2540106 Query 18036 CTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | | || || | |||| ||||||| ||| |||||||| || || ||||||| || Sbjct 2540105 CCAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAG 2540046 Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGT-GATTATAATATAAT 18154 | || || || || ||| || | | | | || ||| || | ||||| Sbjct 2540045 TAATAATTCTTTCAAC----GATCTTTGGATCTGGTCTATGTTGTAAATGGGCAAATAAT 2539990 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||| ||||||||||||||||| || | | ||||||||||| || ||| Sbjct 2539989 AAACATGCAAAGTCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTT 2539930 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGA---AACTACTAGAA 18271 || || ||||| | ||||||||| || | ||| || || ||||| | ||| ||| ||| Sbjct 2539929 AATCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACT-GAA 2539871 Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTAT 18329 | || ||||| ||||| ||| ||||| || | ||||| || ||||| | || | Sbjct 2539870 A--AAGATACCTTCAACAGCA-GCGAAAGCAACCAATCTCTCGGCAAACAATGCCTCGGA 2539814 Query 18330 TGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 || | |||||| | ||||| || | | || || || | || | Sbjct 2539813 ATCT-TGGATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGTGGAATGGTTTCAA 2539755 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 ||||||| || || || |||||| | ||| || |||||||| || || || || | Sbjct 2539754 TAGCATTGAATAAGAAGTCAGCTTCTTTTGGATCCTTGATATAAGTTTCAATCAATAATG 2539695 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 | || |||| || || ||| ||||||| || || || | || || ||| |||| | Sbjct 2539694 AGTAAGTTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTT 2539635 Query 18510 CGGGATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | ||| ||||| || ||| |||| |||| ||||| ||||||||||| ||||| || Sbjct 2539634 CTGGAATTTGAACTTCAGCT-GAAAAGTTTTCCACCAAGTTCTCATTAACAATACCATCG 2539576 Query 18569 GCAGATGCGAAAAATGCCAAAACATATT----TAATGAAATGTTTTTCATTATCCTTGAG 18624 | | || || || ||||| | | || ||| |||| | ||||||||| || | Sbjct 2539575 GATGCGGCAAAGAAAGCCAAGA-TTCTTCCGATAAAGAAACG---TTCATTATCGTTTAA 2539520 Query 18625 ATTGT---TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 || | |||| |||| | |||||| || ||| | |||||| | |||||| || || Sbjct 2539519 TTTTTCTCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGA 2539460 Query 18682 TGATTCGGCCTGTTTGTACATTT 18704 | || || | |||||||||| Sbjct 2539459 AGCCTCAGCTTTCTTGTACATTT 2539437 >seq2 Length=2433673 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | ||||| || || || || ||||| || || ||||| ||| Sbjct 20986 AAAATGCAAATTTTCGTCAAAACTTTAACCGGTAAGACTATCACTTTGGAAGTTGAATCC 21045 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| || || || ||| || ||||| ||||| || || || ||||| Sbjct 21046 TCCGACACTATTGACAATGTCAAGTCTAAGATCCAAGACAAAGAGGGTATTCCACCAGAC 21105 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||| || | ||||| ||||| ||||| || || Sbjct 21106 CAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACCTTATCCGACTAC 21165 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||||| | || | || || ||||| ||||| ||||| |||| Sbjct 21166 AACATCCAAAAAGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTG 21217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871926812800