Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 266 6e-66 seq2 156 8e-33 >seq1 Length=2936865 Score = 266 bits (294), Expect = 6e-66 Identities = 390/544 (72%), Gaps = 11/544 (2%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || ||||||||| | ||||| || || || || || || | || || || Sbjct 2540278 TTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAAATGTT 2540219 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATA 38949 | ||||||||| |||||||| || ||| ||| ||||| | || | | | || | Sbjct 2540218 TTCCATAAAATCGAATGGATTAGTGACATTGTAAACTTTTT-TATTACCCAAAGCAACCA 2540160 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 |||||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 2540159 ATAATCTATCAGCAACAAATTCAACATATTGACACATTAATTTACAATTCATACCCAATA 2540100 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | ||| |||||| |||||| || ||||||||||| ||||| ||||||| |||| | Sbjct 2540099 AACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAATAA 2540040 Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129 | | || | || ||| ||| | ||| | || || ||| ||| |||||||| Sbjct 2540039 T--TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTA-AATGGGCAAATAATAAACATG 2539983 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 |||| || || |||||||||||||| | | | || ||||| || ||||||||||||| Sbjct 2539982 CAAAGTCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCCTG 2539923 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAATA 39246 |||| || ||||| || || | ||| || || ||||||| ||| ||| |||| || | Sbjct 2539922 GCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACT-GAAA--AAGA 2539866 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 |||| || ||| || || || | | ||| | |||||| | | |||| | Sbjct 2539865 TACCTTCAACAGCAGCGAAAGCAACCAATCTCTCGGCAAACAATGCCTCGGAATCTTGGA 2539806 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| | ||||||||||| || || ||||| || || || |||| ||||| || | Sbjct 2539805 TCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGTGGAATGGTTTCAATAGCATTGA 2539746 Query 39367 ATAA 39370 |||| Sbjct 2539745 ATAA 2539742 >seq2 Length=2433673 Score = 156 bits (172), Expect = 8e-33 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || ||||||| ||||| || || Sbjct 21224 TTCTTACCACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCTTTTTGGATGTTG 21165 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || ||||| | || |||| || ||||||||||||||||| || ||||| |||||| Sbjct 21164 TAGTCGGATAAGGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGG 21105 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || ||||| || || ||||| ||||| || ||| || ||||| ||||| || || Sbjct 21104 TCTGGTGGAATACCCTCTTTGTCTTGGATCTTAGACTTGACATTGTCAATAGTGTCGGAG 21045 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| | ||| || || ||||| ||||| ||||| | ||| || |||||||| Sbjct 21044 GATTCAACTTCCAAAGTGATAGTCTTACCGGTTAAAGTTTTGACGAAAATTTGCATTTT 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135909486400