Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 163 8e-35 seq4 109 2e-18 seq2 89.7 2e-12 >seq1 Length=2936865 Score = 163 bits (180), Expect = 8e-35 Identities = 429/650 (66%), Gaps = 21/650 (3%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| ||||| |||| ||| ||| ||||| | ||||||||||||||||| Sbjct 2416585 GTATTCGACAATTTCACAACACAAGTTGGAAGATTTGATAATACCTAAATTCTTCTGGTT 2416644 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || || |||||||||||||||| || | ||| ||||||| || || || | || || Sbjct 2416645 GGACTTGGTGTTACAAGCATCCTTATACAACATGAATGGGGTACCAGTTTCGGTTTGAGC 2416704 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG--CCTTCC 155807 |||| || ||| | | | || || || | || || || | |||||| Sbjct 2416705 TTCCAAGATGGAGTACCACAACTTTTGAGCCTTGAT--GGTTTTTCTACCACGACCTTCC 2416762 Query 155808 GACTCATATTTCATATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAG 155865 |||||||| |||| | || || || ||||| ||| || || ||| | Sbjct 2416763 CTTTCATATTTTTCGTACAAC--TCAACAAACTCGTCACCATAAGTGTCGGCCAATCCTG 2416820 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAA-----ATTTTATTACCGATTACACGCTCCAT 155920 | | || || | |||| | ||| ||||| || || | || ||| Sbjct 2416821 GAGCTTCATTTGGAGAGAACAATGTCCACTCACCATTTTGTTCA-----ACTCTCTTCAT 2416875 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 ||| | ||| ||| | || ||| | || || || | || || | || Sbjct 2416876 AAACAAATCTGGAATCCACAAGGCCGGGAATAAATCTCTAGCTCTAATTTCTTCCTTACC 2416935 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||| ||||| | | ||| | ||| || |||||| || ||| || ||||||| Sbjct 2416936 GTGGTTCTTTCTGATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATACAA 2416995 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 ||||||| |||| |||||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 2416996 AGCAAAAGCACCAGGTCTCTTGTTACCACCTTGATCAACATAACGGGCAGTGTTGTTGAA 2417055 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 |||| | |||||| ||||||||||| ||||| || || || || ||||| | ||| Sbjct 2417056 AACACGAACCATAGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGCACC 2417115 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGC 156217 || || |||| || ||||| || | ||||||||||| | | || |||||| ||| Sbjct 2417116 AGTGGAACGAATGTTGTGAATGTGCAAACCAATACCACCAGCACTCTTTGAAATTAAAGC 2417175 Query 156218 GCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTG 156267 || |||| || | ||||||||||||||||||| |||| ||||| Sbjct 2417176 ACAAGTTTTTAAGGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTG 2417225 Score = 118 bits (130), Expect = 3e-21 Identities = 236/345 (68%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAAT 288942 ||||| ||||| | ||| ||||| | ||||||||||||| | || || | |||| Sbjct 2719316 TCTAAGATATCAGGTCTATTTGTACCGGCCAATACAACAACATGGTCAGTACTGTCAAAT 2719375 Query 288943 CCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTT 289002 || ||||| || | |||||| | ||| ||| || ||||| || | ||| || Sbjct 2719376 CCGTCCATTTCAACCAATAATTGATTCAATGTAGTTTCTCTCTCATCGTTGGCGCCTGTT 2719435 Query 289003 GAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 | || ||| | | || ||| ||||||| ||||||||||| |||| || | | Sbjct 2719436 GCATTTCCCT--TTGATC-TTTGCTTACCAATTGCATCAATTTCATCAACAAACACAATC 2719492 Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 | |||| ||||| ||| ||| || || || || | |||||| || || || | |||| Sbjct 2719493 GATGGAGCATTTTCTCTTGCAGTTTTGAACAAATCACGTACACGTGAGGCACCTACACCA 2719552 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGAAT-GAATGTTACATTTGCTTCGCC 289181 ||| ||||||| |||||||| ||| | || || |||| || | ||| ||||| || Sbjct 2719553 ACAAACATTTCAACAAATTCCGAACCAGAAAC-AGAATAAAACGGAACACCAGCTTCACC 2719611 Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 ||| || | || || | ||| ||||||||||| || || || Sbjct 2719612 AGCTGTGGCTTTAGCGAGTAATGTTTTACCTGTTCCCGGAGGACC 2719656 >seq4 Length=1591921 Score = 109 bits (120), Expect = 2e-18 Identities = 210/304 (69%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| ||||||| | ||||| |||||||| || |||||||| ||| | || || Sbjct 14160 CATAATATCTTCCAAAGCCTTGACCAAACGACGTTGGATATAACCCGTTTCTGCAGTCTT 14219 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | |||| |||| ||||||||||| | ||||| || Sbjct 14220 AACAGCAGTATCAATAAGACCTTCTCTACCAGCCATTGCATGGAAGAAAAACTCTTGTGG 14279 Query 302685 TCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 ||| | || | ||| | | ||| | ||||| ||||| | ||||| |||| || Sbjct 14280 -CGTTAAACCTCTCAA-ATAAGAGTTTTCAACAAAACCCTTTGATTCGGGGGAATAATCA 14337 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCA 302802 ||||| || || |||| | | || || | || | || || | ||||| || Sbjct 14338 TCTTTGGTGAAATGAGGCAATGAACGGTCAGCAAAACCAAAAGGAATTCTTTTTCCTTCG 14397 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGG 302860 ||| | ||||| || | || | |||||||||||| || ||||| | ||||||| Sbjct 14398 ACGATTTGCTGACCGACACATGCCGACATCTGCGAAATGTTGATAAATGA--ACCCTTGG 14455 Query 302861 AGCC 302864 | || Sbjct 14456 AACC 14459 Score = 96.9 bits (106), Expect = 1e-14 Identities = 236/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||| |||||| | ||||||||||| |||| ||||| | |||| | | ||| Sbjct 1370570 CTTTCTTTACCGATGGCATCAATTTCATCAACAAAAATGATTGCTGGAGCCATATCTCTT 1370629 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | || || || | |||||| ||||| |||| ||||||| ||||||| || ||| Sbjct 1370630 GCTGTCTTGAACAAATCACGTACACGAGATGCACCAACACCAACAAACATTTCAACGAAT 1370689 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| |||| || || ||||| |||| ||||| || || || | || | Sbjct 1370690 TCTGAACCGGAAACACTAAGGAATGGTACACCAGCTTCACCGGCAGTGGCTTTAGCTAAC 1370749 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | ||||||||||| || || |||||| ||| | | || || | ||| || || Sbjct 1370750 AAGGTCTTACCTGTACCCGGAGGTCCCGATAAGATTGCACCACGAGGAATTTTGGCACC- 1370808 Query 289261 GCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 || || ||| |||| |||| || || || | |||| |||| | ||| | | Sbjct 1370809 -CAATTTTTCATACTTCTTAGGGTCCTGCAAGAACTTGACAAATTCCATGATTTCTTCCT 1370867 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCG--TTCTTG 289371 ||| |||||||| || || ||||| || | || |||| |||| |||||| Sbjct 1370868 TTGATTCATCACACCCAGCAACATCCTTGAACTTTATCTTAACATCGGTTTCTTG 1370922 Score = 93.3 bits (102), Expect = 1e-13 Identities = 115/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| || | |||||||| ||| || || ||| || | ||||||||| | Sbjct 13392 AATTTCTTTAAGTCTTGGAACACCCAAGGTGACATT---CTTTGAAGAGACACCAGCATA 13448 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||| ||||||| || | |||||||| |||||||||||| ||| || |||| | Sbjct 13449 ATGGAATGTATTCAACGTCATTTGAGTAGCTGGCTCACCAATGGATTGAGCAGCAACAAC 13508 Query 301935 ACCAACCATTTCTCC-TGGTGCTACAATAGACTT 301967 |||||||||||| || ||||| ||||| || || Sbjct 13509 ACCAACCATTTCACCAGGGTGC-ACAATCGATTT 13541 >seq2 Length=2433673 Score = 89.7 bits (98), Expect = 2e-12 Identities = 216/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||| | ||| |||||||| || | || || |||| ||| || | || Sbjct 89060 CCAATAGCATCCAATTCATCAATGAATATAATTGCTGGTGATTTTTCTCTAGCTTGTCCA 89119 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||||||||| | | || |||| ||||||||||| ||| ||||||||||| | Sbjct 89120 AATAATTCTCTAATTCTCTTGGCACCAACACCAACATACAATTCATCAAATTCAGAACCA 89179 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || | | || | || || || || || ||| || |||| | || ||| Sbjct 89180 GACATAAAGAAAAAGGGGACTCCAGCCTCACCAGCAGTTGCTCTTGCCAACAAGGTTTTA 89239 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT 289268 || || || || || || || | ||| ||||| || | ||| | |||| | | Sbjct 89240 CCAGTACCTGGAGGGCCTGTCAACAAAACACCCTTGGGCAATTTACCACCCAAACCAGTG 89299 Query 289269 ATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | ||||| | || ||||| ||||| || ||||||||||| | |||| | |||| |||| Sbjct 89300 A-ATTTC-GAAGGATCTTTCAAAAAATCAACAATTTCCTCCAATTCAGCTCTTGCTTCAT 89357 Query 289328 CACATCCTGCTACATCAGCAAA 289349 |||| ||| ||||| | ||| Sbjct 89358 CACAACCTTGAACATCGGAAAA 89379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817449138696