Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 288 1e-72 seq2 93.3 5e-14 >seq1 Length=2936865 Score = 288 bits (318), Expect = 1e-72 Identities = 844/1289 (65%), Gaps = 31/1289 (2%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||||||||| | |||||||||||||| |||||||| |||||||| ||||| Sbjct 2415997 TCTTCTGGAGTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTGTTACCCAAAATTTG 2416056 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 || ||||| || ||||||||||| |||| ||| | | ||| | | ||| | | Sbjct 2416057 TGATGTGGAAGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTCATACCATGTTTGGC 2416116 Query 110818 GATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATG 110875 | || || | ||||||| || || || | | |||| ||||||| | Sbjct 2416117 AAGTTTTTTTTTCAATTCATCCCAATCCCATAATTCTGTAGGCTTTCTG--TCCCACAAG 2416174 Query 110876 TCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG 110935 ||| | || | || |||||||| || || || || | |||||||||| | ||||| Sbjct 2416175 TCATATTGTAACAAACCTTGGGATGCTGGTGATCCTTGGTAGGTTTCATAAGGACCTTCT 2416234 Query 110936 GCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995 ||| ||||||||| || || | | |||||||| || ||||| || || || Sbjct 2416235 TCTTGTGCCAATTCAATAGAAGCTTCAACAGCAGCGTGATAGATAGTTTCGAAAATTTGA 2416294 Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCC 111055 || | || | ||||| | ||||| ||| || | | | || || |||| Sbjct 2416295 ATGTTTAATTCTCTAGCTTCTTGGGAATCGAATCCGATTCTTAAAACCATGAAGGCATCA 2416354 Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 111115 || | |||||| || ||||| |||| |||||||||| ||| ||||| || | ||| Sbjct 2416355 GCCAAACCTTGGACTCCCAATGCAATTGGTCTGTGTCTCATGTTAGATTT---CTCAGCT 2416411 Query 111116 TCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 ||| || || ||| |||| ||||| ||||||| ||| | || ||||||| || Sbjct 2416412 TCAGGGACTGGGTAATAATTCCTGTCTATGACTCTGTTCAAGTTACGAGTAACAACTTTG 2416471 Query 111173 GTGATTTCATGAAGTTTTTCATAAT-----CAAAAGTGCGAGTC-TCTTCATTGACATAC 111226 || | ||||| | || ||| | | ||| ||| | |||| | ||| || Sbjct 2416472 GTAACATCATGCAACTTGTCAAAGTTGTACCAAGCGTGTTTACCATCTTGTTCAACAAAC 2416531 Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 || | || || |||||||| || || ||||| || || | ||| ||| || Sbjct 2416532 GAAGGTAACGCAATCGATGCCAAGTTACAGACAGCAACTTCGTCTGGAGCTGAGTATTCG 2416591 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | |||||| ||| ||||||||| || || | || |||||||| ||||| ||| Sbjct 2416592 ACAATTTCACAACACAAGTTGGAAGATTTGATAATACCTAAATTCTTCTGGTTGGACTTG 2416651 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||| || |||||||| || | |||| | || || || || || || || | || | Sbjct 2416652 GTGTTACAAGCATCCTTATACAACATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAG 2416711 Query 111407 ATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGG---CCCGTCCCTCCGCCTC 111462 || | | ||| ||| | | | || | |||| || | || || ||| || Sbjct 2416712 ATGGAGTACCACAACTTTTGAGCCTTG----ATGGTTTTTCTACCACGACCTTCCCTTTC 2416767 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 || ||| ||| | | ||||||| ||||| | ||||| | ||||| || | Sbjct 2416768 ATATTTTTCGTACAACTCAACAAACTCGTCACCATAAGTGTCGGCCAATCCTGGAGCTTC 2416827 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 | |||| |||| | | ||| | |||| || ||||| | |||||| || | ||||| Sbjct 2416828 ATTTGGAGAGAACAATGTCCACTCACCATTTTGTTCAACTCTCTTCATAAACAAATCTGG 2416887 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 |||||||| || | || | ||||||| | | ||||| | ||| ||||| || Sbjct 2416888 AATCCACAAGGCCGGGAATAAATCTCTAGCTCTAATTTCTTCCTTACCGTGGTTCTTTCT 2416947 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 111702 | ||||| ||| || | |||||| ||||||||| |||||||| | || | || || Sbjct 2416948 GATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATACAAAGCAAAAGCACC 2417007 Query 111703 ----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 || | | ||| |||||| ||||| || || ||| ||| || || |||| || Sbjct 2417008 AGGTCTCTTG-TTACCACCTTGATCAACATAACGGGCAGTGTTGTTGAAAACACGAACCA 2417066 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818 | || |||||||||| || ||| ||||| || |||| || | ||| | | Sbjct 2417067 TAGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGCACCAGTGGAACGAA 2417126 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC-ACTCCGTA 111877 | || ||||||| |||||||| ||||| | |||||| ||| |||| | | || Sbjct 2417127 TGTTGTGAATGTGCAAACCAATACCACCAGCACTCTTTGAAATTAAAGCACAAGTTTTTA 2417186 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || |||| ||||| | || || || || || | || | | ||| ||| ||| Sbjct 2417187 AG-GTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAAGAAACAAGATGAC 2417245 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 || || ||| |||| ||||||||||| || Sbjct 2417246 ATTTGTGGTTTTGGAGTACCAGCATTAAA 2417274 Score = 96.9 bits (106), Expect = 4e-15 Identities = 280/425 (66%), Gaps = 11/425 (3%) Strand=Plus/Plus Query 11535 TGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG 11594 ||||||| || ||||| || | ||||||||| | ||| |||||||||||| || | Sbjct 2719368 TGTCAAATCCGTCCATTTCAACCAATAATTGATTCAATGTAGTTTCTCTCTCATCGTTGG 2719427 Query 11595 C-----TGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAA 11649 | | |||| | | | | |||||| || | |||||||| ||||||| || Sbjct 2719428 CGCCTGTTGCATTTCCCTTTGAT--CTTTGCTTACCAATTGCATCAATTTCATCAACAAA 2719485 Query 11650 GACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 ||||| |||| |||||| | || ||| || | ||| || || | | |||||| Sbjct 2719486 CACAATCGATGGAGCATTTTCTCTTGCAGTTTTGAACAAATCACGTACACGTGAGGCACC 2719545 Query 11710 CACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGAT-GAATGGGACATTTG 11768 |||||||||||||| || ||||| | | |||| || | || || || ||| | Sbjct 2719546 TACACCAACAAACATTTCAACAAATTCCGAACCAGA-AACAGAATAAAACGGAACACCAG 2719604 Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828 |||||| || ||||| ||||| | || || || || || || ||| | |||| Sbjct 2719605 CTTCACCAGCTGTGGCTTTAGCGAGTAATGTTTTACCTGTTCCCGGAGGACCTGAAAGAA 2719664 Query 11829 GGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAAT 11888 || || || ||||| || |||||| | |||| | ||||| | ||| |||| Sbjct 2719665 TAGCACCGCGAGGGATTTTTGCACCAAGTTTTTCATATTTTTCGGGAT-TTTGCAAAAAG 2719723 Query 11889 C-CACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAAGCGG 11947 | ||||| ||| | ||| | ||| ||| | | || || ||||||| |||| | Sbjct 2719724 CTCACAAACTCGGTGACTTCTTGTTTTGCCTCCGCCATACCTGCAACATCCTTGAACTTG 2719783 Query 11948 GTTTT 11952 ||||| Sbjct 2719784 GTTTT 2719788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 288/441 (65%), Gaps = 20/441 (5%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || || || |||| | ||| || ||||| || ||| Sbjct 2539983 GCAAAGTCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCCT 2539924 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| | ||||||||||| |||||| ||| ||||| || ||| ||||| Sbjct 2539923 GGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCA-AATGAACCACTGAAAAAGAT 2539865 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 ||| || ||| || || |||| | | ||||| || | | || | ||| Sbjct 2539864 ACCTTCAACAGCAGCGAAAGCAACCAATCTCTCGGCAAACAA---TGCCTCGGAATCTTG 2539808 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 122894 | |||| | || ||||| | |||||||| | ||| ||| | |||| || || | Sbjct 2539807 GATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGTGGAATGGTTTCAATAGCATT 2539748 Query 122895 AAATAA-----CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAA 122949 ||||| | |||||||| | |||||| || || | ||||||||| ||| Sbjct 2539747 GAATAAGAAGTCAGCTTCTTT-----TGGATCCTTGATATAAGTTTCAATCAATAATGAG 2539693 Query 122950 TATGTTTCGCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTC 123008 || ||||| |||| ||| ||| || ||| || ||||||| || ||||| Sbjct 2539692 TAAGTTTCTGAGTGAATGTTTTCCATCAT-AATTTGGAATCCGTAGAAAGATTTAGCTTC 2539634 Query 123009 GCTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGA 123068 || ||||| ||| | | ||| || | | |||||| |||||| |||||||| Sbjct 2539633 TGGAATTTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTCTCATTAACAATACCATCGGA 2539574 Query 123069 CCCAGCAAAGAATGCCAGGAT 123089 | |||||||| |||| ||| Sbjct 2539573 TGCGGCAAAGAAAGCCAAGAT 2539553 >seq2 Length=2433673 Score = 93.3 bits (102), Expect = 5e-14 Identities = 176/258 (68%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| ||||| || ||||| || ||||| ||||| || ||||| ||| | ||||| Sbjct 2123210 TATGGACGTGTAGCTCCACGTTCAGGTCTTGCTGTCAAACATGGAATTTCAACCGGTGCT 2123151 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 || || |||||| | || || |||||||| ||||| || | || ||||| ||| Sbjct 2123150 GGGGTAATTGATGCTGATTACCGGGGTGAAGTTAAAGTTGTCTTGTTTAATCATTCAGAT 2123091 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAA 164783 ||| | ||||| | || || || ||| | || || ||| | || | || | || | Sbjct 2123090 AAACATTTTGAAATTAAAAAGGGAGATAGAATTGCTCAATTAGTTTTGGAAAGAATTGTA 2123031 Query 164784 ACACCCGATGTGGAGGAAATTGGTGT-----TCTTG-AAGAGACGGAGAGAGGTGCGGGT 164837 | ||||| |||||||||||| | | ||| | | || || | |||| || Sbjct 2123030 AATGCCGATTTGGAGGAAATTGATTTGGAAGGATTGTCAAATACTGAACGTGGTGAAGGA 2122971 Query 164838 GGATTTGGATCTACTGGT 164855 ||||||||||| |||||| Sbjct 2122970 GGATTTGGATCGACTGGT 2122953 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 181775 TTTTGTGAAGATATACCTCGTTTGAGAAGCGTCTTTACCACCCATGAGACGC----GTAC 181830 || ||| |||||||| |||| || ||||||||||||||| || ||| | || Sbjct 253942 TTCTGTAAAGATATATCTCGCAGCAGCAGCGTCTTTACCACC----AGTCGCTCTTGAAC 253887 Query 181831 CAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCA 181890 | || |||| ||||| | || ||| ||||||||||| || | ||| | |||| Sbjct 253886 CGAAAGCACCATTTGGCTTCAAAATGTTGATGTTGTTTGATCCGACAAAGTTTTGTGCCA 253827 Query 181891 ACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAA 181950 | || ||| || | | | | || |||||||| || ||||| ||| || || | Sbjct 253826 AACCAATGATTGTTTGCACTAACGAGACTTCACCATGATGGTATCCTGTGTTTTCACTTA 253767 Query 181951 CATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAAGCAAGCAT 182010 ||||||| ||||| || ||||| || |||||| ||| | || | | ||| ||| || Sbjct 253766 CATATGCTGCCAATTGCGCCACTTTGATTTCACTTTTCAAATTTCTCTTGAAACAACCAA 253707 Query 182011 ACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| || || || || ||||| | |||||| Sbjct 253706 ACAAAACCTTTCTTTGACCTGGCTTCAAACCATC 253673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031937196800