Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F000315875.1_202012-03-14] 8 sequences; 12,659,401 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 275 7e-69 seq4 96.9 4e-15 seq2 95.1 1e-14 >seq1 Length=2936865 Score = 275 bits (304), Expect = 7e-69 Identities = 947/1462 (65%), Gaps = 31/1462 (2%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 ||||||||| ||||||| | || |||| | ||| | ||| || ||||| | Sbjct 2417457 TATTTTGGTTTCAAAACTTTAGA-AAGATCATATTTGTTACGTATCAATGGTAAAGTAGC 2417399 Query 104215 GGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGA 104274 |||| |||||| | || | ||| | || || |||||||| ||||| |||| || | Sbjct 2417398 TGAAAGACCACAGCATTTGATTATGAGAGTTGCTATCGGTATACATGG--AAGAGAT--A 2417343 Query 104275 TTCT----GTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACAC 104330 | | ||| | || || || || |||||| ||| | || | ||| | | | Sbjct 2417342 TCCCAAGAGTCATTGAAACTTATAACTTGATGTCGCAAAGATACTTTACTCATGGTTCTC 2417283 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | | || ||||||||||| |||| ||| |||||||| ||| ||| | | || | Sbjct 2417282 CTTGTTTGTTTAATGCTGGTACTCCAAAACCACAAATGTCATCTTGTTTCTTGGTTGCAA 2417223 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA-GTGTGCGCAAATCTCA 104449 || || || || || | ||||| |||| || |||| | ||||| ||| ||| Sbjct 2417222 TGAAAGAAGATTCTATTGAAGGTATTTATGACAC-CTTAAAAACTTGTGCTTTAATTTCA 2417164 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 ||| | ||||| |||||||| ||||||| || | | | ||| | || |||| Sbjct 2417163 AAGAGTGCTGGTGGTATTGGTTTGCACATTCACAACATTCGTTCCACTGGTGCTTATATT 2417104 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| ||| || |||||||||| || ||| |||| || || ||| ||| Sbjct 2417103 GCTGGTACAAACGGTACTTCTAATGGTATTATCCCTATGGTTCGTGTTTTCAACAACACT 2417044 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGA 104625 || || ||||| |||||| | || | | || || || | || | |||||||| Sbjct 2417043 GCCCGTTATGTTGATCAAGGT-GGTAACAAGAGACCTGGTGCTTTTGCTTTGTATCTTGA 2416985 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 ||||||||| |||||| | || ||| ||||| | | ||||| ||| | || || Sbjct 2416984 ACCATGGCACAGTGATATCTTTGATTTCATTGAGATCAGAAAGAACCACGGTAAGGAAGA 2416925 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | ||| | ||| | || | |||||||||||| | || ||||||||||| Sbjct 2416924 AATTAGAGCTAGAGATTTATTCCCGGCCTTGTGGATTCCAGATTTGTTTATGAAGAGAGT 2416865 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGC 104805 ||| | | ||| | ||| | | || | |||| | | || || || | |||| | Sbjct 2416864 TGAACAAAATGGTGAGTGGACATTGTTCTCTCCAAATGAAGCTCCAGGATTGGCCGACAC 2416805 Query 104806 CGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC 104865 ||||| ||||||| | | ||| ||| || || |||||||| | | Sbjct 2416804 TTATGGTGACGAGTTTGTTGAGTTGTACGAAAAATATGAAAGGGAAGGTCGTGGTAGAAA 2416745 Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 || | ||| | ||||| | | || | | |||||||||| |||||||| Sbjct 2416744 AACCATCAAGGCTCAAAAGTTGTGGTACTCCATCTTGGAAGCTCAAACCGAAACTGGTAC 2416685 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 |||| |||| | || || || || |||||| ||| || || |||||||| ||| | Sbjct 2416684 CCCATTCATGTTGTATAAGGATGCTTGTAACACCAAGTCCAACCAGAAGAATTTAGGTAT 2416625 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||||| |||||| | ||| ||||| | |||| ||| ||| || || Sbjct 2416624 TATCAAATCTTCCAACTTGTGTTGTGAAATTGTCGAATACTCAGCTCCAGACGAAGTTGC 2416565 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACAT 105104 ||| |||||| | ||||| || || | || || ||| || | ||| | ||| || Sbjct 2416564 TGTCTGTAACTTGGCATCGATTGCGTTACCTTCGTTTGTTGAACAAGATGGTAAACACGC 2416505 Query 105105 TTG-----ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAG 105159 ||| | | ||| || | || || ||||| ||| ||| || ||| | ||||| Sbjct 2416504 TTGGTACAACTTTGACAAGTTGCATGATGTTACCAAAGTTGTTACTCGTAACTTGAACAG 2416445 Query 105160 AGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACA 105216 ||| || || || |||| |||||| || ||| ||| |||||||| |||||||| Sbjct 2416444 AGTCATAGACAGGAATTATTACCCAGTCCCTGA---AGCTGAGAAATCTAACATGAGACA 2416388 Query 105217 CCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGC 105276 | | ||||||| | || || || ||| | || |||| ||||| ||| | || Sbjct 2416387 CAGACCAATTGCATTGGGAGTCCAAGGTTTGGCTGATGCCTTCATGGTTTTAAGAATCGG 2416328 Query 105277 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC 105336 ||| |||||| | ||||| | ||| | || | || || || || || |||||||| Sbjct 2416327 ATTCGATTCCCAAGAAGCTAGAGAATTAAACATTCAAATTTTCGAAACTATCTATCACGC 2416268 Query 105337 CGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396 ||| |||| || | || |||||| | | || ||||| |||||||||| | || Sbjct 2416267 TGCTGTTGAAGCTTCTATTGAATTGGCACAAGAAGAAGGTCCTTATGAAACCTACCAAGG 2416208 Query 105397 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGCTTC 105455 || ||||| || ||||| || | |||| ||| ||||||| | || | | || | Sbjct 2416207 ATCACCAGCATCCCAAGGTTTGTTACAATATGACTTGTGGGACAGAAAGCCTACAGAATT 2416148 Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515 | | || ||||| | | || || | | | ||| | | ||| | | Sbjct 2416147 A-TGGGATTGGGATGAATTGAAAAAAAAACTTGCCAAACATGGTATGAGAAACTCTTTGT 2416089 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 105575 | |||||||||||||||| || ||||| ||||||| |||||||| |||||||| |||| Sbjct 2416088 TGGTGGCTCCAATGCCAACCGCTTCCACATCACAAATTTTGGGTAACAATGAATGTTTTG 2416029 Query 105576 AACCCTACACGACGAACATCTA 105597 |||| ||||| |||||||||| Sbjct 2416028 AACCATACACTTCGAACATCTA 2416007 >seq4 Length=1591921 Score = 96.9 bits (106), Expect = 4e-15 Identities = 217/321 (68%), Gaps = 4/321 (1%) Strand=Plus/Plus Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668 ||||||| |||||||| || ||| | |||||| | || | ||| || || ||||| Sbjct 1370490 TATCAAATCCATCCATTTCAACCAACAATTGGTTCAAGGTGTTTTCACGCTCGTCATTTC 1370549 Query 9669 CTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 | ||||| |||| || | || || || | ||||||||| ||||||| || | || Sbjct 1370550 CGCCCATACGACCATTACCTCTTTCTTTACCGATGGCATCAATTTCATCAACAAAAATGA 1370609 Query 9729 TGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 | ||| | || | || | ||| || | ||| |||||||| || || ||| Sbjct 1370610 TTGCTGGAGCCATATCTCTTGCTGTCTTGAACAA-ATCACGTACACGAGATGCACCAACA 1370668 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGG-AACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||||| || || || | || ||| |||| | | ||| || ||| || ||| Sbjct 1370669 CCAACAAACATTTCAACGAATTCTGAACCGGAAACACT-AAGGAATGGTACACCAGCTTC 1370727 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| ||| ||||| || | | |||||||| ||||| || |||| | || || Sbjct 1370728 ACCGGCAGTGGCTTTAGCTAACAAGGTCTTACCTGTACCCGGAGGTCCCGATAAGATTGC 1370787 Query 9907 ACCTCGTGGAATCTTGGCGCC 9927 ||| || ||||| ||||| || Sbjct 1370788 ACCACGAGGAATTTTGGCACC 1370808 >seq2 Length=2433673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165 ||||| ||||| || ||||| || ||||| ||||| |||||||| || | ||||| Sbjct 2123210 TATGGACGTGTAGCTCCACGTTCAGGTCTTGCTGTCAAACATGGAATTTCAACCGGTGCT 2123151 Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGAC 154225 || || ||||| | || ||| ||||||||| ||||| || | || ||||| ||| Sbjct 2123150 GGGGTAATTGATGCTGATTACCGGGGTGAAGTTAAAGTTGTCTTGTTTAATCATTCAGAT 2123091 Query 154226 AAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGAGAGGTGTGAG 154285 ||| | ||||| | || | ||| || | || || ||| | ||| | || || || Sbjct 2123090 AAACATTTTGAAATTAAAAAGGGAGATAGAATTGCTCAATTAGTTTTGGAAAGAATTGTA 2123031 Query 154286 ACACCCGATGTGGAGGAAATTG 154307 | ||||| |||||||||||| Sbjct 2123030 AATGCCGATTTGGAGGAAATTG 2123009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260741673920