Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq69 307 1e-78 >seq69 Length=709337 Score = 307 bits (340), Expect = 1e-78 Identities = 619/903 (69%), Gaps = 19/903 (2%) Strand=Plus/Minus Query 23823 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 23882 ||||| | |||||| || |||||| || ||| || | ||||| || ||||| || Sbjct 558792 TCTTG-GCCATAACACCAGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTC 558734 Query 23883 TTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTT 23942 || || | || || || |||||||| ||||| ||||||| || ||||| || | | || Sbjct 558733 TTCCCAGCCAAGGAAATGTTTTCCATAAAATCAAATGGATTAGTGACATTGTAAACTTTT 558674 Query 23943 TTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATT 24002 ||| ||||| || | |||||||| || ||||| || | |||| ||| | | Sbjct 558673 TTATTACCCAAAGCAACCAATAATCTATCAGCAACAAATTCGACATATTGACACATTAAT 558614 Query 24003 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 24062 | ||||||||| || | | ||||||| | ||| |||||| ||||||| |||||| Sbjct 558613 TTACAATTCATACCCAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATT 558554 Query 24063 GAGACCGCGTCTGTTATAATAGATCTTACT--GTTTCTTCACTC-GGTGGATACAATAAA 24119 || || || || ||||| |||| | | | || || ||| || |||| Sbjct 558553 TCAACAGCTTCAGTAATAAT---TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAA 558497 Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || ||| | |||||||||||||| ||||| ||| ||||| | || |||||||||| Sbjct 558496 TGAGCAAATAATAAACATGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCG 558437 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 ||||| || || | ||| ||||| | || | || || | ||| || || || |||||| Sbjct 558436 TTGGAGAAAGTTAATCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAAT 558377 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACC 24298 || ||| || || || ||||| || || || || |||| | ||| || || | | Sbjct 558376 GAACCACTGAAAAAGATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAAT 558317 Query 24299 GGCGCTG--TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 | | | | || || ||||| || || |||||||| ||||||||||| | || || Sbjct 558316 GCCTCGGAATCTTGGATCCATCTGATG-GCCCAATCAGCCTTCTTTTTAATTTGCGGAAT 558258 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 || || |||||||| || | | ||| ||| || ||| || | || || ||||| Sbjct 558257 GGTTTCAATAGCATTGAATAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAAT 558198 Query 24416 CAAAAGACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 ||| | || | || |||| || ||||||||||| || ||||| |||||||||||| Sbjct 558197 CAATA-ACGAGTAAGTTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAG 558139 Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTA 24534 || |||| || | ||| || ||||| |||| ||| | || |||||||| || | Sbjct 558138 ATTTAGCTTCTGGAATTTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAA 558079 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA-ATATTTTTCGTCTGGT 24593 | || || || ||||| || ||||| | | ||||| | | || | | || Sbjct 558078 TACCATCGGATGCGGCAAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGT 558019 Query 24594 GTTAGTTTAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 24650 ||| ||| | ||||||||| | ||||||| || ||| | |||||| ||||||| Sbjct 558018 -TTAATTTTTCTCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAG 557960 Query 24651 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 ||||| ||||| ||||| || ||||| | |||||| ||||| ||| |||||||| || Sbjct 557959 AATGAAGCCTCAGCCTTCTTGTACATTTGCCAGATTTCATGGTATCTGATTGGAAACATG 557900 Query 24711 ACA 24713 ||| Sbjct 557899 ACA 557897 Score = 264 bits (292), Expect = 1e-65 Identities = 1172/1843 (64%), Gaps = 46/1843 (2%) Strand=Plus/Plus Query 52804 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 52862 |||| ||||||||||| | ||| || |||| || || | | ||||||||| || || | Sbjct 432629 CAATAGTGAATTGAATAGCAGCAGAGGCGGCTTGTGTTCTCAAATAGTACATACCAGTCT 432688 Query 52863 TTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTG 52922 ||| || ||||||| ||||| ||||||||||| | ||| | || || Sbjct 432689 TTAATCCTTTCTTCCATCCATAAAAGTGCATACTTGTCAATTTACCCATTGTTGGGTCCT 432748 Query 52923 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 52982 ||||| || || | ||||| |||||| ||||||||| |||| || | ||||| | Sbjct 432749 TGATATGAATGTTTAATGATTGTGATTGATCAATGAAGGCTGCCCTATCAGAGGCCATAT 432808 Query 52983 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 53042 || || |||||| | |||||||| | || || || | | ||||| || || | Sbjct 432809 CGATAATATGCTTTTGAGAGATTTCCCACACTGTCTTGTACAATGCTTTAATTTCATCGG 432868 Query 53043 GAAGGTTTGT---ATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCAT 53099 | | ||||| | || || || ||| | | ||||| ||| |||| || ||| Sbjct 432869 GGATGTTTGGCAAAGCTTGGATGGAACCATTGTTTGAAATAATACTACTCTTCATAGCAT 432928 Query 53100 CATTCCATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 53158 | ||||| ||| | || ||| | | | | | |||||||| | ||| ||| Sbjct 432929 CGTTCCA-AATACCCAAATCAACCAAATCCTTCAACAAGTATGGATTAACAATTTGGAAT 432987 Query 53159 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 53218 || |||| ||| ||||| | | ||| || || || || ||||| | | | ||||| Sbjct 432988 TCACCAGCCAACACTCTTCTGGAGTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTG 433047 Query 53219 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 53278 || ||||||||||| | || || || || ||||| || |||||||| ||| ||||| Sbjct 433048 TTACCCAAAATTTGTGATGTGGAAGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTC 433107 Query 53279 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 53336 | ||| ||||| | | ||| | ||| | ||||||| ||| | || | || Sbjct 433108 ATACC--ATGTTTGGCAAGTTTTTGTTTCAATTCATCCCAATCCCATAATTCTGTAGGCT 433165 Query 53337 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATAT 53392 ||||| | ||| | | |||| | ||||| || Sbjct 433166 TTCTGTCCCACAAGTCATATTGTAACAAACCTTGGGATGCTGGTG----ATCCTTGGTAG 433221 Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452 || || || || ||||| | | || | |||| | || || | ||| ||| ||| Sbjct 433222 GTTTCATAAGGACCTTCTTCTTGTGCCAATTCAATAGAAGCTTCAACAGCAGCGTGATAG 433281 Query 53453 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG-GATAATT 53511 || |||||||| || | | |||| ||| ||||| || ||| ||| ||| || Sbjct 433282 ATAGTTTCGAAAATTTGAATGTTTAATTCTCTAGCTTCTTGGGAATCGAATCCGATTCTT 433341 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 || | || || || || || || ||||| || || | | || ||||| |||||| | Sbjct 433342 AAA-ACCATGAAGGCATCAGCCAAACCTTGGACTCCCAATGCAATTGGTCTGTGTCTCAT 433400 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 ||||| | |||||||| || | || |||||||| | ||||| | | | || | ||| Sbjct 433401 GTTAGATTTCTCAGCTTCAGGGACTGGGTAATAATTCCTGTCTATGACTCTGTTCAAGTT 433460 Query 53632 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT-----CAAAT-TGT---CC 53682 | || |||||| ||||| | || ||| ||| | ||| ||| || Sbjct 433461 ACGAGTAACAACTTTGGTAACATCATGCAACTTGTCAAAGTTGTACCAAGCGTGTTTACC 433520 Query 53683 ATCTATTACAA---AC-ATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT 53738 |||| | ||| || | | | || ||||| ||||||| ||||| || || || || | Sbjct 433521 ATCTTGTTCAATAAACGAAGGTAAA-GCAATCGATGCCAAGTTACAGACAGCAACTTCGT 433579 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | | | |||| | || ||| || | || | | ||||| | ||||||| Sbjct 433580 CTGGAGCTGAGTATTCGACAATTTCACAACACAAGTTGGAAGATTTGATAATACCTAAAT 433639 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | | ||| || ||| ||||||| ||||||||||| | |||||||| |||||||||| Sbjct 433640 TCTTTTGGTTGGACTTGGTGTTACAAGCATCCTTATACAACATGAATGGGGTACCAGTTT 433699 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 | | || | ||| | || | | ||| | ||||||| || | ||| || | Sbjct 433700 CGGTTTGAGCTTCCAAGATGGAGTACCACAACTTTTGAGCCTTGATGGTT--TTTCTACC 433757 Query 53919 TCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 | ||| ||||| ||| | ||||| |||||||||| || || | | Sbjct 433758 ACGACCTTCCCTTTCATATTTTTCGTACAACTCAACAAACTCGTCACCATAAGTGTCAGC 433817 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 |||||| ||| ||||| ||| | | ||| | |||||| || | | | |||| || Sbjct 433818 CAATCCTGGAGCTTCATTTGGAGAGAACAATGTCCACTCACCATTTTGTTCAACTCTCTT 433877 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 |||||| | ||| || ||||| | ||| |||| |||||| | ||| ||| || || Sbjct 433878 CATAAACAAATCTGGGATCCACAAGGCTGGGAATAAATCTCTAGCTCTGATTTCTTCCTT 433937 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || |||||| | | || | ||| | | |||||| ||||| ||||| | || Sbjct 433938 ACCGTGGTTCTTTCTGATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATA 433997 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 | | | | | || || | ||||| || || ||||| | || | || ||||| || Sbjct 433998 CAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACGGGCAGTGTTGTT 434057 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 |||| | | ||| || ||||||||||| || | ||| || || || | ||||| Sbjct 434058 GAAAACACGAACCATAGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGC 434117 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 ||| ||| |||||| ||| ||| | ||| || || || || | || || ||||| Sbjct 434118 ACCAGTGGAACGAATGTTATGAATGTGCAAACCAATACCACCAGCACTCTTTGAAATTAA 434177 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 || || ||||| || ||||| || || || ||| ||| || |||| || | Sbjct 434178 AGCACAAGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAA 434237 Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 ||||| |||||||| | ||| || ||||||||||| ||||||| | || Sbjct 434238 GAAACAAGATGACATTTGTGGTTTTGGAGTACCAGCATTAAATAAACAAGGAGAACCATG 434297 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT----ATATCCC 54512 ||||| || ||| || | | || || || || | ||| ||| ||||||| Sbjct 434298 GGTAAAGTATCTTTGCGACATCAAGTTATAAGTTTCAA----TGACTCTTGGGATATCCC 434353 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 | ||| || || | || || | ||| | || || || ||||||||| | | || Sbjct 434354 TTCCATGTATACCGATAGCAACTCTCATAATCAAATGTTGTGGTCTTTCAGCTACTTTAC 434413 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACC 54615 || || | ||| || ||| |||| |||||||| ||||| Sbjct 434414 CATTGATACGTAACAAATATGATCTTTCTAAAGTTTTGAAACC 434456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720560987200