Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19]
140 sequences; 13,271,996 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq39 141 1e-28
seq54 125 1e-23
seq41 116 6e-21
>seq39
Length=58077
Score = 141 bits (156), Expect = 1e-28
Identities = 283/413 (69%), Gaps = 10/413 (2%)
Strand=Plus/Plus
Query 205559 TTACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATA 205617
|||| | |||||| |||||| | |||||| || |||| |||| | | ||| |
Sbjct 17294 TTACGTAAAATTG-ACAAAATACATGACATGGAGGTAATGCCATCAATGGGAAATCAGGA 17352
Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCA---GGtttattttttattttattt 205674
|||||||| |||| | || ||| |||| ||| || ||| | || | ||| ||
Sbjct 17353 GGATTCCAAGCTG---ACATGATAATTCTTCGATCATACGGATTAGTCTTCAATTTCTTG 17409
Query 205675 atAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATAT 205734
|| | || | |||||||||||||||||| || || | ||||| ||| ||||
Sbjct 17410 ATTACATCTTGTAATTGATCAAATCCTTGGCCGGTGTAGTCGGTATCACAATCTTGATAT 17469
Query 205735 TTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTA 205794
|||||||||||||| | |||||| || ||||||||||| || ||||||||||| | |
Sbjct 17470 TTAGCACCAAAATGTCTCCATTGGAAGCCATAAACTGGTCCCAAATCACCTTCACGACGA 17529
Query 205795 TCA-TTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggat 205853
| | |||| ||| | || | | | ||| | ||||| | ||||| || | ||
Sbjct 17530 TGAGTTAATCCCAAG-TTGTCCAAAAATTCTCGCAGACCATTACCTTCCCATATCTTGAC 17588
Query 205854 tcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTC 205913
||||| | | | ||| || | || || ||||||| ||||||||| || | ||| |
Sbjct 17589 CCCTTTTTCACTCAAAATCTTGGCATCGGTAGATCCAGCTATAAACCACAAGAGTTCGTG 17648
Query 205914 AACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966
|| || ||| | |||||| | ||| || || | ||| || ||||||||||
Sbjct 17649 AATTATACCTTTGGAAAACACTCGTTTAGTAGTGAGTAAAGGGAATGAATCAT 17701
>seq54
Length=356724
Score = 125 bits (138), Expect = 1e-23
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | || || || || || ||||| || ||| | || |||| ||
Sbjct 21660 AATGCAAATTTTCGTTAAAACCCTTACGGGTAAAACCATCACTTTGGAAGTTGAGTCATC 21719
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || ||| ||| | ||| || || ||||| || ||||| || || || |||||
Sbjct 21720 TGACACCATTGACAATGTTAAATCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCA 21779
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||||| | || ||||| || |||||||| || ||| | |||| ||| || || ||
Sbjct 21780 ACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 21839
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|||||||| ||||| |||||||| ||||| || | || |||||||| ||| ||
Sbjct 21840 CATTCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGGTGGTAAGAA 21896
>seq41
Length=287713
Score = 116 bits (128), Expect = 6e-21
Identities = 168/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
||||||||||| || | || || |||| || || || || || | || ||||| |
Sbjct 13036 ACAATGCAAATTTTCGTCAAAACTTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCT 13095
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|| || ||| ||| | || || || || || ||||||||||| ||||| ||
Sbjct 13096 TCCGACACTATTGACAATGTCAAGTCTAAGATCCAGGACAAAGAAGGTATTCCACCAGAC 13155
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||||| | || ||||| || ||||||||||| || || |||| || || ||
Sbjct 13156 CAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACTCTATCTGACTAC 13215
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772
|| || ||||||||||| |||||||| ||||| || | || |||||||| || ||
Sbjct 13216 AACATCCAAAAAGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTTTTTAA 13272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755454677952000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |