Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq39 141 1e-28 seq54 125 1e-23 seq41 116 6e-21 >seq39 Length=58077 Score = 141 bits (156), Expect = 1e-28 Identities = 283/413 (69%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 205559 TTACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATA 205617 |||| | |||||| |||||| | |||||| || |||| |||| | | ||| | Sbjct 17294 TTACGTAAAATTG-ACAAAATACATGACATGGAGGTAATGCCATCAATGGGAAATCAGGA 17352 Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCA---GGtttattttttattttattt 205674 |||||||| |||| | || ||| |||| ||| || ||| | || | ||| || Sbjct 17353 GGATTCCAAGCTG---ACATGATAATTCTTCGATCATACGGATTAGTCTTCAATTTCTTG 17409 Query 205675 atAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATAT 205734 || | || | |||||||||||||||||| || || | ||||| ||| |||| Sbjct 17410 ATTACATCTTGTAATTGATCAAATCCTTGGCCGGTGTAGTCGGTATCACAATCTTGATAT 17469 Query 205735 TTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTA 205794 |||||||||||||| | |||||| || ||||||||||| || ||||||||||| | | Sbjct 17470 TTAGCACCAAAATGTCTCCATTGGAAGCCATAAACTGGTCCCAAATCACCTTCACGACGA 17529 Query 205795 TCA-TTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggat 205853 | | |||| ||| | || | | | ||| | ||||| | ||||| || | || Sbjct 17530 TGAGTTAATCCCAAG-TTGTCCAAAAATTCTCGCAGACCATTACCTTCCCATATCTTGAC 17588 Query 205854 tcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTC 205913 ||||| | | | ||| || | || || ||||||| ||||||||| || | ||| | Sbjct 17589 CCCTTTTTCACTCAAAATCTTGGCATCGGTAGATCCAGCTATAAACCACAAGAGTTCGTG 17648 Query 205914 AACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966 || || ||| | |||||| | ||| || || | ||| || |||||||||| Sbjct 17649 AATTATACCTTTGGAAAACACTCGTTTAGTAGTGAGTAAAGGGAATGAATCAT 17701 >seq54 Length=356724 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || ||||| || ||| | || |||| || Sbjct 21660 AATGCAAATTTTCGTTAAAACCCTTACGGGTAAAACCATCACTTTGGAAGTTGAGTCATC 21719 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| || || ||||| || ||||| || || || ||||| Sbjct 21720 TGACACCATTGACAATGTTAAATCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCA 21779 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || |||||||| || ||| | |||| ||| || || || Sbjct 21780 ACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 21839 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 |||||||| ||||| |||||||| ||||| || | || |||||||| ||| || Sbjct 21840 CATTCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGGTGGTAAGAA 21896 >seq41 Length=287713 Score = 116 bits (128), Expect = 6e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | || || |||| || || || || || | || ||||| | Sbjct 13036 ACAATGCAAATTTTCGTCAAAACTTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCT 13095 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| | || || || || || ||||||||||| ||||| || Sbjct 13096 TCCGACACTATTGACAATGTCAAGTCTAAGATCCAGGACAAAGAAGGTATTCCACCAGAC 13155 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | || ||||| || ||||||||||| || || |||| || || || Sbjct 13156 CAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACTCTATCTGACTAC 13215 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || || ||||||||||| |||||||| ||||| || | || |||||||| || || Sbjct 13216 AACATCCAAAAAGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTTTTTAA 13272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454677952000