Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq69 304 1e-77 >seq69 Length=709337 Score = 304 bits (336), Expect = 1e-77 Identities = 605/888 (68%), Gaps = 21/888 (2%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||| ||| ||||||||||||||||||||| || || || | || ||||| || Sbjct 558773 TTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTCCCAGCCAAGGAAATGTT 558714 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAA 16059 ||||||||||||||| ||||| | ||| | ||| ||| | ||||| | | Sbjct 558713 TTCCATAAAATCAAATGGATTAGTG--ACATT-GTAAACTTTTTTATTACCCAAAGCAAC 558657 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 |||||||||||| || |||||||| | ||| || |||||| | ||| ||||| || | Sbjct 558656 CAATAATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATACCCAA 558597 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| |||| || | || || || || || | |||||| || | ||| |||||| | || Sbjct 558596 TAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAAT 558537 Query 16180 TATATCTCTTACTACACTATTTAACGGAG--GGTTTAA----TAAGTGTTTAAACATTAT 16233 || |||| | || | ||| ||| ||| || ||| || ||| | || Sbjct 558536 AAT---TCTTTCAACGATCTTT---GGATCTGGTCTATGTTGTAAATGAGCAAATAATAA 558483 Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| || |||||| || || |||||||| | || ||||| ||||| || || || | Sbjct 558482 ACATGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAA 558423 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 |||||||| | |||| ||| || | ||| || |||| |||||||||||| || || Sbjct 558422 TCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACTGAAAAA 558363 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 ||||||||||| || || || |||||||||| |||| | || | | | || Sbjct 558362 GATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAATGCCTCGGAATCTTG 558303 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||| | | ||||||| || || | ||||| ||| | || || ||||| Sbjct 558302 GATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTTCAATAGCATT 558243 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 |||||| | | |||||| ||| || ||||| || || | ||| || | Sbjct 558242 GAATAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAATCAATAACGAGTAAGT 558183 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 |||||| ||||| || ||||| || || || || || || || ||||||| | || Sbjct 558182 TTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAAT 558123 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||||| |||| |||| | |||||||| ||||| || |||||| || || Sbjct 558122 TTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCGGATGCGGC 558063 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTT--TAACCA 16710 ||| || || | || | ||||| ||| ||||| | || ||| | ||| Sbjct 558062 AAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGTTTAATTTTTCTCTCCA 558003 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770 ||| || |||||| |||||||| ||||| | ||||| || ||||| ||||||| Sbjct 558002 ATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTCAGCCTT 557943 Query 16771 TTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA 16818 || ||||||| ||| || || | ||| || ||||||| ||||| Sbjct 557942 CTTGTACATTTGCCAGATTTCATGGTATCTGATTGGAAACATGACATA 557895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511190604000