Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq69 192 5e-44 seq41 109 5e-19 seq35 102 7e-17 seq54 84.2 2e-11 >seq69 Length=709337 Score = 192 bits (212), Expect = 5e-44 Identities = 420/626 (67%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 57505 CCGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATC 57564 |||| |||||||||||| ||||||| | ||| | | |||||||||||| || ||| | Sbjct 557860 CCGAAGAACCACTTTTGAAAGAGAACACACGTCGTTATGTCATGTTTCCAATCAGATACC 557919 Query 57565 CAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAG 57624 || || ||| | |||||||| ||||| || || || || ||||| | |||||| | | Sbjct 557920 ATGAAATCTGGCAAATGTACAAGAAGGCTGAGGCTTCATTCTGGACAGCTGAAGAAATCG 557979 Query 57625 ACCTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTA 57681 | | ||| ||||| |||||| || | || || ||| | |||| Sbjct 557980 ATTTAGGTAAAGATCTTCATGATTGGAGAGAAAAATTAAACGATAATGAACGTTTCTTTA 558039 Query 57682 TTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCG 57741 | | | ||||| || || ||||||||||||||||||||||| || || ||||| | Sbjct 558040 TCGGAAGAATCTTGGCTTTCTTTGCCGCATCCGATGGTATTGTTAATGAAAACTTGGTGG 558099 Query 57742 AAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801 ||| |||||| ||||| ||| | | || || | || || |||||||| ||| | Sbjct 558100 AAAACTTTTCAGCTGAAGTTCAAATTCCAGAAGCTAAATCTTTCTACGGATTCCAAATTA 558159 Query 57802 CCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACA 57861 || |||||| | || ||||||| || ||| || | || || || ||| | |||| | Sbjct 558160 TGATGGAAAACATTCACTCAGAAACTTACTCGTTATTGATTGAAACTTACATCAAGG--A 558217 Query 57862 ACGACGAGAAACGTAGAC----TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 | | |||| | ||| | ||||| || || ||||| || || || ||| Sbjct 558218 TCCAAAAGAA--GCTGACTTTTTATTCAATGCTATTGAAACCATTCCGCAAATTAAAAAG 558275 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| || ||| | |||| |||||| || || ||| ||| || ||||| | Sbjct 558276 AAGGCTGATTGGGCCATCAGATGGATCCAAGATTCCGAGGCATTGTTTGCTGAGAGATTG 558335 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || ||||| || || |||||||| || || || ||||| | || || ||| Sbjct 558336 GTTGCTTTCGCTGCTGTTGAAGGTATCTTTTTCAGTGGTTCATTTGCATCTATTTTCTGG 558395 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 |||||||| | || ||||||| || | || || |||||| || || | || ||| Sbjct 558396 TTGAAGAAAAGAGGTTTGATGCCAGGATTAACTTTCTCCAACGAATTAATTTGTCGTGAC 558455 Query 58098 GAGGGTCTCCATACTGATTTTGCGTG 58123 || ||| | || |||||||| || || Sbjct 558456 GAAGGTTTACACACTGATTTCGCATG 558481 Score = 122 bits (134), Expect = 8e-23 Identities = 879/1410 (62%), Gaps = 42/1410 (3%) Strand=Plus/Plus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| ||||| || ||| | ||||| ||| |||||||||| |||| || || | || || Sbjct 433011 GTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTGTTACCCAAAATTTGTGATGTGGA 433070 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACT 22611 |||||| ||||| || |||| || | |||||||||| || || || | || ||| Sbjct 433071 AGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTCATACCATGTTTGGCAAGTTTTTG 433130 Query 22612 CTTGAG--CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 || | |||| ||| ||||| | || | ||| | ||||||||| || ||| Sbjct 433131 TTTCAATTCATC--CCAATCCCATAATTCTGTAGGCTTTC---TGTCCCACAAGTCATAT 433185 Query 22670 TGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA-TCGC 22728 || |||| || | || || |||| ||| ||||| || ||||| | | | | Sbjct 433186 TGTAACAAACCTTGGGATGCTGGTGATCCTTGGTAGGTTTCATAAGGACCTTCTTCTTGT 433245 Query 22729 GGCAAGT---TCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTT 22785 | ||| | | | |||| || | || ||| ||| ||||| ||||| |||| | Sbjct 433246 GCCAATTCAATAGAAGCT----TCAACAGCAGCGTGATAGATAGTTTCGAAAATTTGAAT 433301 Query 22786 GTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGC 22845 ||| ||||| || | | ||| | || | | | || ||| || || || Sbjct 433302 GTTTAATTCTCTAGCTTCTTGGGAATCGAATCCGATTCTTAAAACCATGAAGGCATCAGC 433361 Query 22846 CATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGG 22905 || ||| || || || | | || |||| || | ||| || || | || || || Sbjct 433362 CAAACCTTGGACTCCCAATGCAATTGGTCTGTGTCTCATGTTAGATTTCTCAGCTTCAGG 433421 Query 22906 CAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTAT 22965 | || || ||||| || || |||||||||||| | || |||| ||| || | Sbjct 433422 GACTGGGTAATAATTCCTGTCTATGACTCTGTTCAAGTTACGAGTAACAACTTTGGTAAC 433481 Query 22966 NNNNNNNNNNNNNTCAAAGTCGTA---AACG------CCCGATTGTACAACAAACTTGTT 23016 ||||||| ||| | || || |||| ||| |||| Sbjct 433482 ATCATGCAACTTGTCAAAGTTGTACCAAGCGTGTTTACCATCTTGTTCAATAAACGAAGG 433541 Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 | || ||||| || | || || || || || |||||| | | ||| || ||||| Sbjct 433542 TAAAGCAATCGATGCCAAGTTACAGACAGCAACTTCGTCTGGAGCTGAGTATTCGACAAT 433601 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 ||| ||| | ||| | | || || | || ||||| | |||||| || || Sbjct 433602 TTCACAACACAAGTTGGAAGATTTGATAATACCTAAATTCTTTTGGTTGGACTTGGTGTT 433661 Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 || | |||||| || | |||| | || || || || ||| || | || | ||| | Sbjct 433662 ACAAGCATCCTTATACAACATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATGGA 433721 Query 23197 TCGCCACATAGTCTGAGCGTGAACACGTCG-----CACGTACCTGCCTTCTTCCTCGTAC 23251 ||||| | ||||| | | | |||| |||| || ||| || || Sbjct 433722 GTACCACAACTTTTGAGCCTTGATGGTTTTTCTACCACG-ACCTTCC--CTT--TCATAT 433776 Query 23252 TTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC 23311 |||| ||||||| | |||| ||| |||| ||| ||| |||| || || | || | Sbjct 433777 TTTTCGTACAACTCAACAAACTCGTCACCATAAGTGTCAGCCAATCCTGGAGCTTCATTT 433836 Query 23312 GGACACATGAGACTCCACATTGAGTCATTTT---CAACGCGTCTCATAAAAAGATCCGGT 23368 ||| | | | ||||| | | |||||| |||| | ||||||| | ||| || Sbjct 433837 GGAGAGAACAATGTCCAC--TCAC-CATTTTGTTCAACTCTCTTCATAAACAAATCTGGG 433893 Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428 ||||| | || ||| | || | || | | || || || ||| ||||||| | Sbjct 433894 ATCCACAAGGCTGGGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGGTTCTTTCTG 433953 Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488 | || | || || || | || ||||| || || || || | ||||| || || Sbjct 433954 ATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATACAAAGCAAAAGCACCT 434013 Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATC 23548 |||||||| || || || ||||| || |||||||| ||||||||| | || | | ||| Sbjct 434014 GGTCTCTTGTTACCACCTTGATCAACATAACGGGCAGTGTTGTTGAAAACACGAACCATA 434073 Query 23549 GGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACG 23608 || | | ||| || || | ||| | || || | | | ||| | | |||| | Sbjct 434074 GGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGCACCAGTGGAACGAATG 434133 Query 23609 TTGTGAACGTGGAAACCTATGCCTCC-GCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 || |||| ||| ||||| || || || || | ||| || || | || || || | Sbjct 434134 TTATGAATGTGCAAACCAATACCACCAGCACTCTTT-GAAATTAAAGCACAAGTCTTTAA 434192 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||| || || || || || || ||||| | || ||||||||||| || ||||| Sbjct 434193 AGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAAGAAACAAGATGACAT 434252 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 ||| | ||| || ||| | || || | || | || |||||||||| | Sbjct 434253 TTGTGGTTTTGGAGTACCAGCATTAAATAAACAAGGAGAACCATGGGTAAAGTATCTTTG 434312 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 |||||| | || || || || ||| | || ||| ||| ||||||||||| || Sbjct 434313 CGACATCAAGTTATAAGTTTCAATGACTCTTGGGATATCCCTTCCATGTATACCGATAGC 434372 Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTC 23877 || | ||| |||| | ||| ||||| || Sbjct 434373 AACTCTCATAATCAAATGTTGTGGTCTTTC 434402 >seq41 Length=287713 Score = 109 bits (120), Expect = 5e-19 Identities = 169/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 31181 ATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGAC 31240 ||| ||||| | |||||||||||||| || ||| | || || || || |||||| | || Sbjct 13028 ATTAAATCACA-ATGCAAATTTTCGTCAAAACTTTAACCGGTAAGACCATCACCTTGGAA 13086 Query 31241 GTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 |||||| | ||||||| | | || | ||||| | || |||||| ||||| | Sbjct 13087 GTTGAATCTTCCGACACTATTGACAATGTCAAGTCTAAGATCCAGGACAAAGAAGGTATT 13146 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || || ||||| || | | || || ||||| ||||| || |||||| || ||| | Sbjct 13147 CCACCAGACCAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACTCTA 13206 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || ||||| ||||||||||| ||| | || |||| | ||| |||| || ||| Sbjct 13207 TCTGACTACAACATCCAAAAAGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 13266 >seq35 Length=214301 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 22436 TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 ||||||| |||| |||||||||||| |||||||| || | || || ||| ||| Sbjct 165857 TCTTTGATGAGATACTTGTTCACCACTTGGAACTCGCCAGATATTACTCGACGTGTGTAT 165798 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 | ||||| || ||||||| ||| |||||||| ||||| ||||||| || ||||| Sbjct 165797 AAATTGGACGTATACGGTTCAAAACATTCATTGAATCCCAAAATCTGAGATGTTGAAGCA 165738 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCA 22589 || ||||| || || | || || |||||||||| Sbjct 165737 GTAGGCATGGGTGCTATCAAGAGTGAGTTTCTCA 165704 >seq54 Length=356724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || || || || || ||||| ||||| | || ||||| | Sbjct 21658 AAAATGCAAATTTTCGTTAAAACCCTTACGGGTAAAACCATCACTTTGGAAGTTGAGTCA 21717 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || | || ||| | || ||||||||||| | || || || Sbjct 21718 TCTGACACCATTGACAATGTTAAATCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGAT 21777 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| ||||| |||||||| | || | ||| || Sbjct 21778 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCTTATCCGACTAC 21837 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||||| ||||| ||| | || |||| | ||| |||| || ||| Sbjct 21838 AACATTCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 21888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765619908800