Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq69 167 5e-36 seq39 102 2e-16 >seq69 Length=709337 Score = 167 bits (184), Expect = 5e-36 Identities = 309/448 (69%), Gaps = 23/448 (5%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| || ||||| |||||||| ||||| || |||||| |||| ||||| ||||||||| Sbjct 558336 GTTGCTTTCGCTGCTGTTGAAGGTATCTTTTTCAGTGGTTCATTTGCATCTATTTTCTGG 558395 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| || ||| | |||| || | || | |||||| || || |||| | | ||| Sbjct 558396 TTGAAGAAAAGAGGTTTGATGCCAGGATTAACTTTCTCCAACGAATTAATTTGTCGTGAC 558455 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGAT--ACCC 102095 |||||| | || || || ||||| || | | |||| | || || Sbjct 558456 GAAGGTTTACACACTGATTTCGCATG-------TTTATTA-----TTTGCTCATTTACAA 558503 Query 102096 CATCAAG-AGA---AAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAA 102148 ||| | ||| || ||| |||||| || | |||||||| || ||||||| || Sbjct 558504 CATAGACCAGATCCAAAGATCGTTGAAAGAATTATTACTGAAGCTGTTGAAATTGAAAAA 558563 Query 102149 GAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGC 102208 ||||| | || | | | | || |||| ||| |||| ||||| || || || ||| | Sbjct 558564 GAATTCTTTACTGATGCTTTACCAGTTAGTTTATTGGGTATGAATTGTAAATTAATGTGT 558623 Query 102209 CAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG-ACTAGAAAAGCACTA 102267 || || | |||||||| || |||| | ||||||||| |||| | || ||||| || Sbjct 558624 CAATATGTCGAATTTGTTGCTGATAGATTATTGGTTGCTTTGGGTAATAAAAAAGTT-TA 558682 Query 102268 TAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTT 102327 ||||| || || || || || ||||| || |||||| | | |||||||| || Sbjct 558683 CAATGTCACTAATCCATTTGATTTTATGGAAAACATTTCCTTGGCTGGGAAGACCAATTT 558742 Query 102328 TTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 |||||||||||||| | || |||||| Sbjct 558743 CTTTGAAAAGAGAGTTTCTGATTATCAA 558770 >seq39 Length=58077 Score = 102 bits (112), Expect = 2e-16 Identities = 199/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| | | |||||| ||| ||||||||||||| || ||| || | Sbjct 17582 ATATGGGAAGGTAATGGTCTGCGAGAATTTTTGGACAACTTGGGATTAACTCATCGTCGT 17523 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||||||||||| || || || ||||||||| | |||||||||||| ||||| | Sbjct 17522 GAAGGTGATTTGGGACCAGTTTATGGCTTCCAATGGAGACATTTTGGTGCTAAATATCAA 17463 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 ||| | |||| || || || | || |||||||||| || || | |||| Sbjct 17462 GATTGTGATACCGACTACACCGGCCAAGGATTTGATCAATTACAAGATGTAATCAAGAAA 17403 Query 35513 CTGAGAGA-AAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 ||| ||| ||||| ||||| |||| || || ||| | || ||||||||| ||| | Sbjct 17402 TTGA-AGACTAATCCGTATGATCGAAGAATTATCATGTCAGCTTGGAATCCTCCTGAT-T 17345 Query 35572 TCACCTT-ATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 || | || ||||| | |||||||| || | | ||||||||| || Sbjct 17344 TCCCATTGATGGCATTACCTCCATGTCATGTATTTTGTCAATTTTACGT 17296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582224933700