Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq69 342 6e-89 seq35 86.0 8e-12 >seq69 Length=709337 Score = 342 bits (378), Expect = 6e-89 Identities = 623/900 (69%), Gaps = 13/900 (1%) Strand=Plus/Minus Query 33270 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 33329 ||||| | |||||| || |||||| || ||| || | ||||| || ||||| || Sbjct 558792 TCTTG-GCCATAACACCAGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTC 558734 Query 33330 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAttttt 33389 || || |||| || || |||||||| |||||||| ||||| || |||||||||| |||| Sbjct 558733 TTCCCAGCCAAGGAAATGTTTTCCATAAAATCAAATGGATTAGTGACATTGTAAACTTTT 558674 Query 33390 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATT 33449 ||| ||||| || | |||||||| || || ||||| | |||| ||| | | Sbjct 558673 TTATTACCCAAAGCAACCAATAATCTATCAGCAACAAATTCGACATATTGACACATTAAT 558614 Query 33450 TCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATG 33509 | ||||||||| || | | ||||||| | ||| |||||| ||||||| |||||| Sbjct 558613 TTACAATTCATACCCAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATT 558554 Query 33510 GATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGT 33569 || || | || ||||| | |||| | | | | ||| |||| |||||| Sbjct 558553 TCAACAGCTTCAGTAATAATTCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAATGA 558494 Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 ||| | |||||||||||||| ||| | ||| ||||| | || |||||||||||| Sbjct 558493 GCAAATAATAAACATGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTG 558434 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || || | ||| ||||| | || | || || | ||| || || || || ||||| Sbjct 558433 GAGAAAGTTAATCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAA 558374 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGC 33748 || || ||||| ||||| || ||||| || |||| | |||||| || | | | | Sbjct 558373 CCACTGAAAAAGATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAATGCC 558314 Query 33749 GCTG--TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33805 | | || || ||||| || || |||||||| ||||||||||| | || || || Sbjct 558313 TCGGAATCTTGGATCCATCTGATG-GCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGT 558255 Query 33806 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 33865 ||| || ||||| || | | ||| ||| || ||| || | ||||| || ||||| Sbjct 558254 TTCAATAGCATTGAATAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAATCAA 558195 Query 33866 AAGACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 | || | || |||| || ||||||||||| || || || |||||||||||| || Sbjct 558194 TA-ACGAGTAAGTTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATT 558136 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33984 |||| || | ||| || ||||| | |||| ||| | || |||||||| || || | Sbjct 558135 TAGCTTCTGGAATTTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAATAC 558076 Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA-ATATTTTTCGTCTGGTGTT 34043 |||| || ||||| || ||||| | | ||||| | | || | | || || Sbjct 558075 CATCGGATGCGGCAAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGT-TT 558017 Query 34044 AGTTTAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 | ||| | ||||||||| | ||||||| || ||| | |||||| ||||||| ||| Sbjct 558016 AATTTTTCTCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAAT 557957 Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 || ||||| ||||| || ||||| | |||||| ||||| ||| |||||| || || ||| Sbjct 557956 GAAGCCTCAGCCTTCTTGTACATTTGCCAGATTTCATGGTATCTGATTGGAAACATGACA 557897 Score = 297 bits (328), Expect = 2e-75 Identities = 1181/1850 (64%), Gaps = 60/1850 (3%) Strand=Plus/Plus Query 62042 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 62100 |||| ||||||||||| | ||| || |||| || || | | ||||||||| || || | Sbjct 432629 CAATAGTGAATTGAATAGCAGCAGAGGCGGCTTGTGTTCTCAAATAGTACATACCAGTCT 432688 Query 62101 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 62160 ||| || ||||||| ||||| |||||||| || | ||| | || || Sbjct 432689 TTAATCCTTTCTTCCATCCATAAAAGTGCATACTTGTCAATTTACCCATTGTTGGGTCCT 432748 Query 62161 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 62220 ||||| || || | ||||| |||||| ||||||||| |||| || | ||||| | Sbjct 432749 TGATATGAATGTTTAATGATTGTGATTGATCAATGAAGGCTGCCCTATCAGAGGCCATAT 432808 Query 62221 TTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 62280 || || |||||| | |||||||| | || || || | | ||||| || || | Sbjct 432809 CGATAATATGCTTTTGAGAGATTTCCCACACTGTCTTGTACAATGCTTTAATTTCATCGG 432868 Query 62281 GAAGGTTTGT---ATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCAT 62337 | | ||||| | || ||||| ||| | | ||||| ||| |||| || ||| Sbjct 432869 GGATGTTTGGCAAAGCTTGGATGGAACCATTGTTTGAAATAATACTACTCTTCATAGCAT 432928 Query 62338 CATTCCATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAAT 62396 | ||||| ||| | || ||| | | | | | || ||||| | ||||||| Sbjct 432929 CGTTCCA-AATACCCAAATCAACCAAATCCTTCAACAAGTATGGATTAACAATTTGGAAT 432987 Query 62397 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA 62456 || |||| ||| ||||| | | ||| || || || || ||||| | | ||||| Sbjct 432988 TCACCAGCCAACACTCTTCTGGAGTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTG 433047 Query 62457 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62516 || ||||||||||| | || || || || ||||| || |||||||| ||| ||||| Sbjct 433048 TTACCCAAAATTTGTGATGTGGAAGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTC 433107 Query 62517 AGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-- 62572 | ||| ||||| | | ||| | ||| | | ||||||| ||| | || | || Sbjct 433108 ATACC--ATGTTTGGCAAGTTTTTGTTTCAATTCATCCCAATCCCATAATTCTGTAGGCT 433165 Query 62573 -----TACAACANNNNNNNNNNNATATTGTAGAATACCGT----TACTGGCGTACGATCC 62623 | | ||| |||||||| | ||| | | |||| | |||| Sbjct 433166 TTCTGTCCCACAAGTC-------ATATTGTAACAAACCTTGGGATGCTGGTG----ATCC 433214 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 | || || ||||| || ||||| | | || | || | | || || | ||| | Sbjct 433215 TTGGTAGGTTTCATAAGGACCTTCTTCTTGTGCCAATTCAATAGAAGCTTCAACAGCAGC 433274 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG- 62742 || ||| || ||||| || || | | |||| ||| ||||| || ||| ||| Sbjct 433275 GTGATAGATAGTTTCGAAAATTTGAATGTTTAATTCTCTAGCTTCTTGGGAATCGAATCC 433334 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 ||| || || | || || || || || || ||||| || || | | || ||||| | Sbjct 433335 GATTCTTAAA-ACCATGAAGGCATCAGCCAAACCTTGGACTCCCAATGCAATTGGTCTGT 433393 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 ||||| | ||||| | |||||||| || | || |||||||| | ||||| | | | | Sbjct 433394 GTCTCATGTTAGATTTCTCAGCTTCAGGGACTGGGTAATAATTCCTGTCTATGACTCTGT 433453 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 | | || | || |||||| ||||| | || ||| ||| | | | | | Sbjct 433454 TCAAGTTACGAGTAACAACTTTGGTAACATCATGCAACTTGTCAAAGTTGTACCAAGCGT 433513 Query 62923 CTATTACAAACATGTTCAAT-------------GCAACAGATGCCAGATTACACACGGCT 62969 | |||| | | |||||||| |||| ||||||| ||||| || || Sbjct 433514 GT-TTACCATCTTGTTCAATAAACGAAGGTAAAGCAATCGATGCCAAGTTACAGACAGCA 433572 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 || || | | | | | |||| | || ||| || | || | | |||||| | Sbjct 433573 ACTTCGTCTGGAGCTGAGTATTCGACAATTTCACAACACAAGTTGGAAGATTTGATAATA 433632 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 |||||||| | ||| || ||| ||||||| ||||||||||| | |||||||| ||| Sbjct 433633 CCTAAATTCTTTTGGTTGGACTTGGTGTTACAAGCATCCTTATACAACATGAATGGGGTA 433692 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT 63149 |||||||| | |||| ||| | || | | ||| | | ||||||| || | | Sbjct 433693 CCAGTTTCGGTTTGAGCTTCCAAGATGGAGTACCACAACTTTTGAGCCTTGATGGTT--T 433750 Query 63150 TTGTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAA 63207 || || | | | ||| ||||| ||| ||||| | |||||||| || || Sbjct 433751 TTCTACCACGACCTTCCCTTTCATATTTTTCGTACAACTCAACAAACTCGTCACCATAAG 433810 Query 63208 CATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 63267 | |||||| ||| ||||| ||| | | ||| | |||||| || | | | | Sbjct 433811 TGTCAGCCAATCCTGGAGCTTCATTTGGAGAGAACAATGTCCACTCACCATTTTGTTCAA 433870 Query 63268 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTT 63327 ||| |||||||| | ||| || ||||| | ||| |||| |||||| | ||| || Sbjct 433871 CTCTCTTCATAAACAAATCTGGGATCCACAAGGCTGGGAATAAATCTCTAGCTCTGATTT 433930 Query 63328 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63387 | || || || |||||| | | || | ||| | | |||||| ||||| |||| Sbjct 433931 CTTCCTTACCGTGGTTCTTTCTGATCTCAATGAAATCAAAGATATCACTGTGCCATGGTT 433990 Query 63388 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63447 | | || | || | | | || || | ||||| || || ||||| | || | || | Sbjct 433991 CAAGATACAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACGGGCAG 434050 Query 63448 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63507 |||| || |||| | | ||| || |||||||| || || |||| || ||||| | | Sbjct 434051 TGTTGTTGAAAACACGAACCATAGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAA 434110 Query 63508 TATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63567 |||| | ||| ||| |||||| ||| ||| | ||| || || || || | || | Sbjct 434111 TATAAGCACCAGTGGAACGAATGTTATGAATGTGCAAACCAATACCACCAGCACTCTTTG 434170 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 | ||||| || || ||||| |||||||| || ||||| || ||| || |||| Sbjct 434171 AAATTAAAGCACAAGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTG 434230 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 || | ||||| |||||||| | | ||| || ||||||||||| ||||| Sbjct 434231 CAACCAAGAAACAAGATGACATTTGTGGTTTTGGAGTACCAGCATTAAATAAACAAGGAG 434290 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT---- 63743 || | || ||||| || ||| || | | || || || |||| ||| ||| Sbjct 434291 AACCATGGGTAAAGTATCTTTGCGACATCAAGTTATAAGTTTCAA----TGACTCTTGGG 434346 Query 63744 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACA 63803 ||||||| | ||| || || | || || | ||| | || || || ||||||||| | Sbjct 434347 ATATCCCTTCCATGTATACCGATAGCAACTCTCATAATCAAATGTTGTGGTCTTTCAGCT 434406 Query 63804 ATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63853 | ||| || || ||||| || ||| |||| |||||||| ||||| Sbjct 434407 ACTTTACCATTGATACGTAACAAATATGATCTTTCTAAAGTTTTGAAACC 434456 >seq35 Length=214301 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 62372 GAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACT 62431 ||||| | ||| || |||||||| || ||||| | ||||| || ||||| | ||| Sbjct 165849 GAGATACTTGTTCACCACTTGGAACTCGCCAGATATTACTCGACGTGTGTATAAATTGGA 165790 Query 62432 GGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 62491 ||||||||||| | | ||||| ||||||||| |||| ||||| ||||| ||||| Sbjct 165789 CGTATACGGTTCAAAACATTCATTGAATCCCAAAATCTGAGATGTTGAAGCAGTAGGCAT 165730 Query 62492 AGGTGCCACCAA 62503 ||||| | ||| Sbjct 165729 GGGTGCTATCAA 165718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816497819200