Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq69 331 9e-86 >seq69 Length=709337 Score = 331 bits (366), Expect = 9e-86 Identities = 641/940 (68%), Gaps = 22/940 (2%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAA---------ATAACG 13362 |||||||| |||| |||| |||| | || | ||||| || | ||||| Sbjct 558838 TAAAAATCTTCATCAAATGCAAAAGCGTTGGCATCTTTATTTTCACTCTTGGCCATAACA 558779 Query 13363 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGAT 13422 || ||||||||| ||| |||||| |||||||| || || || || || ||| || Sbjct 558778 CCAGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTCCCAGCCAAGGAA 558719 Query 13423 ATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTC 13481 || |||||||||||||| |||||||| || ||||| | ||||| | | ||| | | Sbjct 558718 ATGTTTTCCATAAAATCAAATGGATTAGT-GACATTGTAAACTTTTTTATTACCCAAAGC 558660 Query 13482 TAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13541 | |||||||||||||||| ||| || | ||||||| ||||||| | |||||||||||| Sbjct 558659 AACCAATAATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATACC 558600 Query 13542 TATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTT 13601 | || | || || | || ||| || ||||||||||| || ||||| || | Sbjct 558599 CAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGT 558540 Query 13602 TATAATAATCTTAATAATGTCATTAGAA--GGAGGATATTTTAGATGTTTAAAAATTAAA 13659 ||||| | | || || | || || || || || || ||| ||| | |||| Sbjct 558539 AATAATTCTTTCAACGATCT--TTGGATCTGGTCTATGTTGTAAATGAGCAAATAATAAA 558482 Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || || |||||| || | || || || | || ||| | |||||| || || |||||| Sbjct 558481 CATGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAAT 558422 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 ||||||||||| |||| ||| || ||||| || || | || ||||| || || || Sbjct 558421 CCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACTGAAAAAG 558362 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 || || ||||| ||||| || || | | || || ||||| |||| | | | Sbjct 558361 ATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAATGCCTCGGAATCTTGG 558302 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 |||||| | | ||||| |||| || |||||||| || ||||| || |||||| Sbjct 558301 ATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTTCAATAGCATTG 558242 Query 13900 AATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 |||||| || ||||| || | ||||| |||| || ||||| | ||| || Sbjct 558241 AATAAAAAGTCAGCTTCTTTTGGATCCTTGA--TGTAAGTTTCAATCAATAACGAGTAAG 558184 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 |||| ||||| |||||||| || || || || || || ||| || ||||||||| Sbjct 558183 TTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAA 558124 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 ||| || || | |||| |||| ||||||||||||||||||||||||| || | Sbjct 558123 TTTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCGGATGCGG 558064 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT---TCC 14134 |||| || ||||| || || |||||| | | || | || ||| | ||||| ||| Sbjct 558063 CAAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGTTTAATTTTTCTCTCC 558004 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 |||| | ||| ||| | ||| | ||| ||| ||||||| || ||| |||| | Sbjct 558003 AATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTCAGCCT 557944 Query 14195 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 | || |||||| ||| ||||| | ||| || ||||| Sbjct 557943 TCTTGTACATTTGCCAGATTTCATGGTATCTGATTGGAAA 557904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587962469600