Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq41 104 2e-17 seq54 89.7 5e-13 >seq41 Length=287713 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | |||||||||||||| |||||||| || Sbjct 13265 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAT 13206 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||||||||||||| |||||| | ||| || || || || Sbjct 13205 AGAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGA 13146 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || | ||||| | | ||| ||| Sbjct 13145 ATACCTTCTTTGTCCTGGATCTTAGACTTGACATTGTCAATAGTGTCGGAAGATTCAACT 13086 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 13085 TCCAAGGTGATGGTCTTACCGGTTAAAGTTTTGACGAAAATTTGCAT 13039 >seq54 Length=356724 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | || ||||| ||||| |||||||| ||| Sbjct 21887 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCGGAT 21828 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| | ||| ||||| ||||| Sbjct 21827 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGG 21768 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | || ||| Sbjct 21767 ATTCCTTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATGGTGTCAGATGACTCAACT 21708 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || | ||||| ||||| |||||||| Sbjct 21707 TCCAAAGTGATGGTTTTACCCGTAAGGGTTTTAACGAAAATTTGCAT 21661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013512724800