Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq69 237 1e-57 >seq69 Length=709337 Score = 237 bits (262), Expect = 1e-57 Identities = 573/855 (67%), Gaps = 33/855 (4%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || |||||| |||||||| || || || || || | || ||||| || Sbjct 558773 TTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTCCCAGCCAAGGAAATGTT 558714 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTTTTACACCCTAATTCTAG 12975 |||||||||||| || ||||| | || || ||| ||||||| || || | | Sbjct 558713 TTCCATAAAATCAAATGGATTAGT-GA--CATTGTAAACTTTTTTATTACCCAAAGCAAC 558657 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 || ||||| ||||||||||| || | || || |||||| | ||| ||||| || | Sbjct 558656 CAATAATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATACCCAA 558597 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 ||| | || || | ||| || || || || | |||||| || ||||| ||||| ||| Sbjct 558596 TAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAAT 558537 Query 13096 TATGTCTCTTATTACGTTCTCT---AATGGAGGATTTGATAGATGCTTAAACATCATACA 13152 || |||| ||| ||| | ||| || | || ||| ||| | | ||| Sbjct 558536 AAT---TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAATGAGCAAATAATAAACA 558480 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 ||| |||||| ||| || ||||| || | || |||| ||||| || || |||| || Sbjct 558479 TGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCC 558420 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| | |||| ||| || | ||| || |||| ||||| ||||| ||||| || Sbjct 558419 TGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACTGAAAAAGAT 558360 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC-TCTA 13331 |||||||| || || || || | ||| || ||| || || | | | || | | Sbjct 558359 ACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAAC-AATGCCTCGGAATCTTGGA 558301 Query 13332 TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAA--CGCAGTTCATATTTTCTATTGCGTT 13389 |||| | ||||||| | || || | ||||| || | || |||| || || || Sbjct 558300 TCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGG--AATGGTTTCAATAGCATT 558243 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 |||||| | | ||| || || || ||||| || |||||||| || | Sbjct 558242 GAATAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAATCAATAACGAGTAAGT 558183 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 |||||| ||||| ||||||||| |||||||| || || ||| || |||| |||| | Sbjct 558182 TTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAAT 558123 Query 13510 CTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 |||||||| | |||| |||| | |||||||| ||||| || || || || || Sbjct 558122 TTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCGGATGCGGC 558063 Query 13570 aaaaaaaG-CAAGTATGT---GCTTAATAAA--ttttttttCGTTTTCTGACAACTT--- 13620 ||| |||| |||| | | | | || ||| || || |||||| || || Sbjct 558062 AAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGTTT------AATTTTTC 558009 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 | |||||| ||| |||||| |||||| | || ||| | ||||| || ||||| | Sbjct 558008 TCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTC 557949 Query 13681 AGCCTTCTTATACAT 13695 ||||||||| ||||| Sbjct 557948 AGCCTTCTTGTACAT 557934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981664636280