Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq69 228 2e-54 seq41 158 3e-33 >seq69 Length=709337 Score = 228 bits (252), Expect = 2e-54 Identities = 624/938 (67%), Gaps = 37/938 (4%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGC-ATGGTGA 268731 ||||| ||||| | | ||| || | | | ||| || |||||||| ||| | ||| Sbjct 557865 GAACCACTTTTGAAAGAGAACACACGTCGTTATGTCATGTTTCCAAT-CAGATACCATGA 557923 Query 268732 TATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCT 268791 || ||| |||||||| |||| | ||||| || ||||| | |||||| | ||| | Sbjct 557924 AATCTGGCAAATGTACAAGAAGGCTGAGGCTTCATTCTGGACAGCTGAAGAAATCGATTT 557983 Query 268792 GTCTTATGA-CTTAATAGATTGGA---AAAATTTAAAACCAGAA-GAAAGAAGATTTATA 268846 | | || ||| || ||||||| |||| ||||| | | || ||| | ||||| Sbjct 557984 AGGTAAAGATCTTCAT-GATTGGAGAGAAAAATTAAA-CGATAATGAACGTTTCTTTATC 558041 Query 268847 TCTTATATTCTTGCGTTT-TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGA 268905 | | ||||| ||| ||||| | |||||||| ||||| ||||| | || || Sbjct 558042 GGA-AGAATCTTGGCTTTCTTTGCCGCATCCGATGGTATTGTTAATGAAAACTTGGTGGA 558100 Query 268906 GAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGC 268965 || || | || || || ||||| ||||| | || ||| ||||||||||| || Sbjct 558101 AAACTTTTCAGCTGAAGTTCAAATTCCAGAAGCTAAATCTTTCTACGGATTCCAAATTAT 558160 Query 268966 TATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAA 269025 || ||||| ||||| ||||| | ||| |||| || || ||||| || | ||| Sbjct 558161 GATGGAAAACATTCACTCAGAAACTTACTCGTTATTGATTGAAACTTACATCAAGGAT-- 558218 Query 269026 CAACGAAAAGAAAA-GACTATTT--TC--TTCTATGAGAACTATGGACTGTGTGAGaaaa 269080 | ||||||| |||| ||| || | |||| ||| || | | ||| Sbjct 558219 ---CCAAAAGAAGCTGACTTTTTATTCAATGCTATTGAAACCATTCCGCAAATTAAAAAG 558275 Query 269081 aaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCC-----TTACGGAGAAAGGT 269135 || |||| ||||| | | |||||| | ||| || | | || | |||| | | Sbjct 558276 AAGGCTGATTGGGCCATCAGATGGATCCAAGATTCCGAGGCATTGTTTGCTGAGAGA--T 558333 Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 | |||||||| || ||||| |||||||| || || || || ||||| |||| || | Sbjct 558334 TGGTTGCTTTCGCTGCTGTTGAAGGTATCTTTTTCAGTGGTTCATTTGCATCTATTTTCT 558393 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 |||||||||||||||| | |||||||||||||||||||| |||||||| || | | | Sbjct 558394 GGTTGAAGAAAAGAGGTTTGATGCCAGGATTAACTTTCTCCAACGAATTAATTTGTCGTG 558453 Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAAC 269315 |||||||||||||| || ||||| |||||||||||| || ||| | ||| | || Sbjct 558454 ACGAAGGTTTACACACTGATTTCGCATGTTTATTATTTGCTCATT---TACAACATAGAC 558510 Query 269316 CTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTC 269375 | || | | | || | |||||| | ||||||| | |||| |||||| Sbjct 558511 CAGATCCAAAGATCGTTGAAAGAATTATTACTGAAGCTGTTGAAATTGAAAAAGAATTCT 558570 Query 269376 TAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATA 269435 | || || ||| || | | | | | ||||||||| | |||| ||| ||||| Sbjct 558571 TTACTGATGCTTTACCAGTTAGTTTATTGGGTATGAATTGTAAATTAATGTGTCAATATG 558630 Query 269436 TTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAA---TATAACG 269492 | | || || |||||||||| |||| |||| || || ||||||| || || | Sbjct 558631 TCGAATTTGTTGCTGATAGATTATTGGTTGCTTTGGG---TAATAAAAAAGTTTACAATG 558687 Query 269493 TTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCG 269552 | ||||| ||| ||||||||| || || || || | || ||| | |||||||| | Sbjct 558688 TCACTAATCCATTTGATTTTATGGAAAACATTTCCTTGGCTGGGAAGACCAATTTCTTTG 558747 Query 269553 AGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATG 269590 | ||| | || | | ||||| ||| ||||| ||| Sbjct 558748 AAAAGAGAGTTTCTGATTATCAAAAAGCTGGTGTTATG 558785 >seq41 Length=287713 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||||||||| || || || |||||||||||||||||||||||||||| |||| Sbjct 13241 TGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGATAGAGTTCTACCGTCTTCTAATTGT 13182 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| || || || || |||||||| ||||| ||||| Sbjct 13181 TTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCCTGGATCTTA 13122 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || ||| || ||| || || | || || |||||||| || Sbjct 13121 GACTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTT 13062 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | ||||| || || || |||||| || Sbjct 13061 AAAGTTTTGACGAAAATTTGCATTGTG 13035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396334679120