Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq69 298 6e-76 >seq69 Length=709337 Score = 298 bits (330), Expect = 6e-76 Identities = 643/957 (67%), Gaps = 30/957 (3%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttttttt---------GAC 21172 || ||||||||||| |||| |||| ||| | || | ||||| ||| | | Sbjct 558844 TTCATTTAAAAATCTTCATCAAATGCAAAAGCGTTGGCATCTTTATTTTCACTCTTGGCC 558785 Query 21173 ATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCC 21232 |||| || ||||||||||||| |||||| ||||| || ||||| ||||| || || Sbjct 558784 ATAACACCAGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTCCCAGCC 558725 Query 21233 AATGATATAGATTCCATAAAATCAAATGGATT-TTCAGATT-TAAA-TATTTTATTACAA 21289 || || || ||||||||||||||||||||| | | ||| |||| | ||||||| | Sbjct 558724 AAGGAAATGTTTTCCATAAAATCAAATGGATTAGTGACATTGTAAACTTTTTTATT---A 558668 Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 |||| | ||||||||||| || |||||||| | ||||||||||||||||| |||| Sbjct 558667 CCCAAAGCAACCAATAATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAA 558608 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 |||||||| | || | || || | ||| | || || || |||||| || || Sbjct 558607 TTCATACCCAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACA 558548 Query 21410 GCTTC---AACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTA 21466 ||||| || |||| | | | ||| | || | || || ||| || | Sbjct 558547 GCTTCAGTAATAATTCTTTCAACGATCTT---TGGATCTGGTCTATGTTGTAAATGAGCA 558491 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 || | |||||||| |||||| || |||||||| || | || |||||||| || || Sbjct 558490 AATAATAAACATGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAG 558431 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG--CTC 21584 || ||||| || ||||| || ||||| || || ||||| || || || ||||||| | Sbjct 558430 AAAGTTAATCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCA 558371 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 |||||| || || || ||||| ||||| || ||||| |||| ||| | | | | Sbjct 558370 CTGAAA--AAGATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAATGCCT 558313 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 | ||| |||||| | ||||| | ||||| | |||||| ||| || | Sbjct 558312 CGGAATCTTGGATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTT 558253 Query 21705 CAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 ||||||| || || | | | ||| | | ||| | ||| Sbjct 558252 CAATAGCATTGAATAAAAAGTCAGCTTCTTTTGGATCCTTGATG-TAAGTTTCAATCAAT 558194 Query 21765 NACTA-TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTT 21823 || | || |||| || || || ||||| ||| || || |||||||| ||| || | Sbjct 558193 AACGAGTAAGTTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTA 558134 Query 21824 GCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883 || |||| | |||||| || | |||| || ||||||||||||| || || ||| Sbjct 558133 GCTTCTGGAATTTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCA 558074 Query 21884 TCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT 21943 || |||||||| || ||||| || || ||||| | ||||| ||||| ||||| Sbjct 558073 TCGGATGCGGCAAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGTTTAAT 558014 Query 21944 TTTT---TCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTA 22000 |||| ||||||| | |||||| |||||| | |||||||| |||||| || | Sbjct 558013 TTTTCTCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAA 557954 Query 22001 GCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057 || |||||| || ||||| |||||| |||| ||| | |||||||| || ||| Sbjct 557953 GCCTCAGCCTTCTTGTACATTTGCCAGATTTCATGGTATCTGATTGGAAACATGACA 557897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899869173600