Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq69 329 4e-85 >seq69 Length=709337 Score = 329 bits (364), Expect = 4e-85 Identities = 624/903 (69%), Gaps = 19/903 (2%) Strand=Plus/Minus Query 32349 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 32408 ||||| | |||||| || |||||| || ||| || | ||||| || ||||| || Sbjct 558792 TCTTG-GCCATAACACCAGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTC 558734 Query 32409 TTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttt 32468 || || | || || || |||||||| ||||| |||||||| || ||||| |||| |||| Sbjct 558733 TTCCCAGCCAAGGAAATGTTTTCCATAAAATCAAATGGATTAGTGACATTGTAAACTTTT 558674 Query 32469 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATT 32528 ||| ||||| || | |||||||| || |||||||| | |||| ||| | | Sbjct 558673 TTATTACCCAAAGCAACCAATAATCTATCAGCAACAAATTCGACATATTGACACATTAAT 558614 Query 32529 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 32588 | ||||||||| || | | ||||||| | ||| |||||| ||||||| |||||| Sbjct 558613 TTACAATTCATACCCAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATT 558554 Query 32589 GAGACCGCGTCTGTTATAATAGATCTTACT--GTTTCTTCACTC-GGTGGATACAATAAA 32645 || || || || ||||| |||| | | | || || ||| || |||| Sbjct 558553 TCAACAGCTTCAGTAATAAT---TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAA 558497 Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 || ||| | |||||||||||||| ||||| ||| ||||| | || |||||||||| Sbjct 558496 TGAGCAAATAATAAACATGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCG 558437 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 ||||| || || | ||| ||||| | || | || || | ||| || || || |||||| Sbjct 558436 TTGGAGAAAGTTAATCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAAT 558377 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACC 32824 || ||| || || || ||||| || || || || |||| | |||||| || | | Sbjct 558376 GAACCACTGAAAAAGATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAAT 558317 Query 32825 GGCGCTG--TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 | | | | || || ||||| || || |||||||| ||||||||||| | || || Sbjct 558316 GCCTCGGAATCTTGGATCCATCTGATG-GCCCAATCAGCCTTCTTTTTAATTTGCGGAAT 558258 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 || || |||||||| || | | ||| ||| || ||| || | || || ||||| Sbjct 558257 GGTTTCAATAGCATTGAATAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAAT 558198 Query 32942 CAAAAGACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 ||| | || | || |||| || ||||||||||| || ||||| ||||||||||| Sbjct 558197 CAATA-ACGAGTAAGTTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAG 558139 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060 || |||| || | ||| || ||||| | |||| ||| | || |||||||| || | Sbjct 558138 ATTTAGCTTCTGGAATTTGAACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAA 558079 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA-ATATTTTTCGTCTGGT 33119 | || || || ||||| || ||||| | | ||||| | | || | | || Sbjct 558078 TACCATCGGATGCGGCAAAGAAAGCCAAGATTCTTCCGATAAAGAAACGTTCATTATCGT 558019 Query 33120 GTTAGTTTAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 33176 ||| ||| | ||||||||| | ||||||| || ||| | |||||| ||||||| Sbjct 558018 -TTAATTTTTCTCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAG 557960 Query 33177 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 ||||| ||||| ||||| || ||||| | |||||| ||||| ||| |||||||| || Sbjct 557959 AATGAAGCCTCAGCCTTCTTGTACATTTGCCAGATTTCATGGTATCTGATTGGAAACATG 557900 Query 33237 ACA 33239 ||| Sbjct 557899 ACA 557897 Score = 282 bits (312), Expect = 5e-71 Identities = 1172/1843 (64%), Gaps = 46/1843 (2%) Strand=Plus/Plus Query 61846 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 61904 |||| ||||||||||| | ||| || |||| || || | | ||||||||| || || | Sbjct 432629 CAATAGTGAATTGAATAGCAGCAGAGGCGGCTTGTGTTCTCAAATAGTACATACCAGTCT 432688 Query 61905 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 61964 ||| || ||||||| ||||| |||||||| || | ||| | || || Sbjct 432689 TTAATCCTTTCTTCCATCCATAAAAGTGCATACTTGTCAATTTACCCATTGTTGGGTCCT 432748 Query 61965 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 62024 ||||| || || | ||||| |||||| ||||||||| |||| || | ||||| | Sbjct 432749 TGATATGAATGTTTAATGATTGTGATTGATCAATGAAGGCTGCCCTATCAGAGGCCATAT 432808 Query 62025 TTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 62084 ||||| |||||| | |||||||| | || || || | | ||||| || || | Sbjct 432809 CGATAATATGCTTTTGAGAGATTTCCCACACTGTCTTGTACAATGCTTTAATTTCATCGG 432868 Query 62085 GAAGGTTTGT---ATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCAT 62141 | | ||||| | || ||||| ||| | || ||||| ||| |||| || ||| Sbjct 432869 GGATGTTTGGCAAAGCTTGGATGGAACCATTGTTTGAAATAATACTACTCTTCATAGCAT 432928 Query 62142 CATTCCATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62200 | ||||| ||| | || ||| | | | | | |||||||| | ||| ||| Sbjct 432929 CGTTCCA-AATACCCAAATCAACCAAATCCTTCAACAAGTATGGATTAACAATTTGGAAT 432987 Query 62201 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 62260 || |||| ||| ||||| | | ||| || || || || ||||| | | | ||||| Sbjct 432988 TCACCAGCCAACACTCTTCTGGAGTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTG 433047 Query 62261 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62320 || ||||||||||| | || || || || ||||| || |||||||| ||| ||||| Sbjct 433048 TTACCCAAAATTTGTGATGTGGAAGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTC 433107 Query 62321 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 62378 | ||| ||||| | | ||| | ||| | ||||||| ||| | || | || Sbjct 433108 ATACC--ATGTTTGGCAAGTTTTTGTTTCAATTCATCCCAATCCCATAATTCTGTAGGCT 433165 Query 62379 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATAT 62434 ||||| | ||| | | |||| | ||||| || Sbjct 433166 TTCTGTCCCACAAGTCATATTGTAACAAACCTTGGGATGCTGGTG----ATCCTTGGTAG 433221 Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494 || || || || ||||| | | || | |||| | || || | ||| ||| ||| Sbjct 433222 GTTTCATAAGGACCTTCTTCTTGTGCCAATTCAATAGAAGCTTCAACAGCAGCGTGATAG 433281 Query 62495 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATG-GATAATT 62553 || |||||||| || | | |||| ||| ||||| || ||| ||| ||| || Sbjct 433282 ATAGTTTCGAAAATTTGAATGTTTAATTCTCTAGCTTCTTGGGAATCGAATCCGATTCTT 433341 Query 62554 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62613 || | || || || || || || ||||| || || | | || ||||| |||||| | Sbjct 433342 AAA-ACCATGAAGGCATCAGCCAAACCTTGGACTCCCAATGCAATTGGTCTGTGTCTCAT 433400 Query 62614 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 ||||| | |||||||| || | || |||||||| | ||||| | | | || | || Sbjct 433401 GTTAGATTTCTCAGCTTCAGGGACTGGGTAATAATTCCTGTCTATGACTCTGTTCAAGTT 433460 Query 62674 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTAC 62733 | || |||||| ||||| | || ||| ||| | | | | | | |||| Sbjct 433461 ACGAGTAACAACTTTGGTAACATCATGCAACTTGTCAAAGTTGTACCAAGCGTGT-TTAC 433519 Query 62734 AAACATGTTCAAT-------------GCAACAGATGCCAGATTACAAACGGCTACCTCAT 62780 | | |||||||| |||| ||||||| ||||| || || || || | Sbjct 433520 CATCTTGTTCAATAAACGAAGGTAAAGCAATCGATGCCAAGTTACAGACAGCAACTTCGT 433579 Query 62781 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 62840 | | | | |||| | || ||| || | || | | ||||| | ||||||| Sbjct 433580 CTGGAGCTGAGTATTCGACAATTTCACAACACAAGTTGGAAGATTTGATAATACCTAAAT 433639 Query 62841 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 62900 | | ||| || ||| ||||||| ||||||||||| | |||||||| |||||||||| Sbjct 433640 TCTTTTGGTTGGACTTGGTGTTACAAGCATCCTTATACAACATGAATGGGGTACCAGTTT 433699 Query 62901 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 62960 | | |||| ||| | || | | ||| | | ||||||| || | ||| || | Sbjct 433700 CGGTTTGAGCTTCCAAGATGGAGTACCACAACTTTTGAGCCTTGATGGTT--TTTCTACC 433757 Query 62961 TCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63018 | ||| ||||| ||| | ||||| | |||||||| || || | | Sbjct 433758 ACGACCTTCCCTTTCATATTTTTCGTACAACTCAACAAACTCGTCACCATAAGTGTCAGC 433817 Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63078 || ||| ||| ||||| ||| | | ||| | |||||| || | | | |||| || Sbjct 433818 CAATCCTGGAGCTTCATTTGGAGAGAACAATGTCCACTCACCATTTTGTTCAACTCTCTT 433877 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138 |||||| | ||| || ||||| | ||| |||| |||||| | ||| ||| || || Sbjct 433878 CATAAACAAATCTGGGATCCACAAGGCTGGGAATAAATCTCTAGCTCTGATTTCTTCCTT 433937 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || |||||| | | || | ||| | | |||||| ||||| ||||| | || Sbjct 433938 ACCGTGGTTCTTTCTGATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATA 433997 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 | || | | | || || | ||||| || || ||||| | || | || ||||| || Sbjct 433998 CAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACGGGCAGTGTTGTT 434057 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 |||| | | ||| || ||||||||||| || ||||| || || || | ||||| Sbjct 434058 GAAAACACGAACCATAGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGC 434117 Query 63319 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 ||| ||| |||||| ||| ||| | ||| || || || || | || || ||||| Sbjct 434118 ACCAGTGGAACGAATGTTATGAATGTGCAAACCAATACCACCAGCACTCTTTGAAATTAA 434177 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || || ||||| || ||||| || || || ||| ||| || |||| || | Sbjct 434178 AGCACAAGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAA 434237 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 ||||| |||||||| | ||| || ||||||||||| ||||||| | || Sbjct 434238 GAAACAAGATGACATTTGTGGTTTTGGAGTACCAGCATTAAATAAACAAGGAGAACCATG 434297 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT----ATATCCC 63554 ||||| || ||| || | | || || || |||| ||| ||| ||||||| Sbjct 434298 GGTAAAGTATCTTTGCGACATCAAGTTATAAGTTTCAA----TGACTCTTGGGATATCCC 434353 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 | ||| || || | || || | ||| | || || || ||||||||| | | || Sbjct 434354 TTCCATGTATACCGATAGCAACTCTCATAATCAAATGTTGTGGTCTTTCAGCTACTTTAC 434413 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63657 || || ||||| || ||| |||| |||||||| ||||| Sbjct 434414 CATTGATACGTAACAAATATGATCTTTCTAAAGTTTTGAAACC 434456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630891144000