Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq69 379 2e-100 seq35 113 5e-20 >seq69 Length=709337 Score = 379 bits (420), Expect = 2e-100 Identities = 636/914 (70%), Gaps = 13/914 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || | |||||| |||||||||||||| || || || | || || || Sbjct 558773 TTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTCCCAGCCAAGGAAATGTT 558714 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||||||||||||||||||| | ||||| || | |||||| || || | | | Sbjct 558713 TTCCATAAAATCAAATGGATTAGTGACATTGTAAACTTTTTTATTACCCAAAGCAACCAA 558654 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || |||||| || ||||||| | |||| ||| | | ||||||||| || | ||| Sbjct 558653 TAATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATACCCAATAA 558594 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 |||| |||| ||||| |||| ||||||| ||| || | || || || | ||||| Sbjct 558593 ACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAATAAT 558534 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | |||| | | | || || | | | | ||| ||| | |||||||| || Sbjct 558533 TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAATGAGCAAATAATAAACATGCGAA 558474 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||| |||| || ||||| | || || ||||| || || || ||||| || ||||| Sbjct 558473 ATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCCTGGCAT 558414 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 || |||||||| || |||||||| ||||| |||||||| ||| || || |||||||| Sbjct 558413 CAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACTGAAAAAGATACCTTC 558354 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATT 19147 || || || |||||||| | ||| || || ||| | || || || || |||||| Sbjct 558353 AACAGCAGCGAAAGCAACCAATCTCTCAGCA-AACAATGCCTCGGAATCTTGGATCCATC 558295 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 | | |||||||||||||||||||| | || || || || |||| ||| |||| | Sbjct 558294 TGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTTCAATAGCATTGAATAAAA 558235 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | || | || ||| || | || | || |||||||| ||| ||||||| | Sbjct 558234 AGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAATCAATAACGAGTAAGTTTCTGAGT 558175 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 |||| ||||| || || || |||||||| ||| || | ||||||| || || |||| Sbjct 558174 GAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAATTTGAACTT 558115 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || |||| |||| ||||| ||||||||||| || ||||| || ||||| || | Sbjct 558114 CAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCGGATGCGGCAAAGAAAG 558055 Query 19388 CTAATACATGTT----TAATAAAATGTTTTTCATCTGAGGTTAATGTAT---TCCAATCA 19440 | || | | || ||| ||| ||| | ||| | ||||| | | |||||||| Sbjct 558054 CCAAGA-TTCTTCCGATAAAGAAACGTTCATTATC---GTTTAATTTTTCTCTCCAATCA 557999 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | || ||||||| |||||| | ||||||| ||||||| || |||||||| || || || Sbjct 557998 TGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTCAGCCTTCTTG 557939 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCT 19560 ||||| | ||| || ||| | ||| || ||||| || ||| | | | | | || ||| Sbjct 557938 TACATTTGCCAGATTTCATGGTATCTGATTGGAAACATGACATAACGACGTGTGTTCTCT 557879 Query 19561 TTAAGAATAGGTTC 19574 || | || ||||| Sbjct 557878 TTCAAAAGTGGTTC 557865 Score = 316 bits (350), Expect = 2e-81 Identities = 1155/1808 (64%), Gaps = 37/1808 (2%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| ||||| ||||||||||||||||| ||| |||||||||| || ||||| Sbjct 432660 TTGTGTTCTCAAATAGTACATACCAGTCTTTAATCCTTTCTTCCATCCATAAAAGTGCAT 432719 Query 47069 ACTAGTTAATTTAGA-ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGAT 47127 ||| || |||||| || | ||| || | ||||||| || | ||||| |||| Sbjct 432720 ACTTGTCAATTTACCCATTGTTGGGTCCTTGA-TATGAATGTTTAATGATTGTGATTGAT 432778 Query 47128 CAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATA 47187 |||| || || | ||||||| |||||||| | |||| | |||| | || ||||| | Sbjct 432779 CAATGAAGGCTGCCCTATCAGAGGCCATATCGATAATATGCTTTTGAGAGATTTCCCACA 432838 Query 47188 CTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGATCCTC 47244 |||| || || | | |||||| || || |||| || | | ||| || || || Sbjct 432839 CTGTCTTGTACAATGCTTTAATTTCATCGGGGATGTTTGGCAAAGCTTGGATGGAACCAT 432898 Query 47245 Cgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaatgttt 47304 |||| ||||| | | || | ||| ||||| ||| || | Sbjct 432899 TGTTTGAAATAATACTACTCTTCATAGCATCGTTCCAAATACCCAAATCAACCAAATCCT 432958 Query 47305 ttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATAT 47364 | || | | |||||||||||||| ||||| |||| | ||||| | | || || | Sbjct 432959 TCAACAAGTATGGATTAACAATTTGGAATTCACCAGCCAACACTCTTCTGGAGTAGATGT 433018 Query 47365 TACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAG 47424 | || |||||||| | | ||||||| || || |||||||| | || || || || | Sbjct 433019 TCGAAGTGTATGGTTCAAAACATTCATTGTTACCCAAAATTTGTGATGTGGAAGCGGTTG 433078 Query 47425 GCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNN 47484 |||| | || || || || ||||| | |||| ||| | | Sbjct 433079 GCATTGGAGCCACCAACAAAGAGTTTCTCATACCATGTTTGGCAAGTTTTTGTTTCAATT 433138 Query 47485 GTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTT 47544 | ||||||||| | |||| || | ||| || |||||||| | | |||| Sbjct 433139 CATCCCAATCCCATAATTCTGTAGGCTTTCTGTCCCACAAGTCATATTGTAACAAACCTT 433198 Query 47545 TACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAAC 47604 | || || || | || |||| ||||||||| | | || || | |||| | Sbjct 433199 GGGATGCTGGTGATCCTTGGTAGGTTTCATAAGGACCTTCTTCTTGTGCCAATTCAATAG 433258 Query 47605 TTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC-CTTGCT 47663 ||||| | ||| | ||| || ||||| || |||| ||||||| |||| || ||| Sbjct 433259 AAGCTTCAACAGCAGCGTGATAGATAGTTTCGAAAATTTGAATGTTTA-ATTCTCTAGCT 433317 Query 47664 TCTGATGATTCAAAAG-GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACC 47722 ||| || || || ||| || | ||| ||||| ||||| || || Sbjct 433318 TCTTGGGAATCGAATCCGAT-TCTTAAAACCATGAAGGCATCAGCCAAACCTTGGACTCC 433376 Query 47723 AATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTT 47782 | |||||||||| || | | ||||| ||||||||| || | ||| || | || Sbjct 433377 CAATGCAATTGGTCTGTGTCTCATGTTAGATTTCTCAGCTTCAGGGACTGGGTAATAATT 433436 Query 47783 TATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATT 47842 | ||||| | | | || | || || || || | Sbjct 433437 CCTGTCTATGACTCTGTTCAAGTTACGAGTAACAACTTTGGTAACATCATGCAACTTGTC 433496 Query 47843 AAAAT-----CAAACTTGTT----AT-TTAT--AACAAACCTATTAAGTGCTATAGATGC 47890 ||| | ||| | |||| || || | || |||| | | || || ||||| Sbjct 433497 AAAGTTGTACCAAGCGTGTTTACCATCTTGTTCAATAAACGAAGGTAAAGCAATCGATGC 433556 Query 47891 TAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950 | ||||| ||||| || || | |||| | |||| | |||||| ||| | || Sbjct 433557 CAAGTTACAGACAGCAACTTCGTCTGGAGCTGAGTATTCGACAATTTCACAACACAAGTT 433616 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTA 48010 | |||||||| |||| ||||| | || || ||||||| || ||||| || Sbjct 433617 GGAAGATTTGATAATACCTAAATTCTTTTGGTTGGACTTGGTGTTACAAGCATCCTTATA 433676 Query 48011 AAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT 48070 | ||| || || || |||||||| | |||| ||| | ||| || | ||| | | Sbjct 433677 CAACATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATGGAGTACCACAACTTTTG 433736 Query 48071 AGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130 |||||| || |||| | | || ||| ||||| || |||| |||| Sbjct 433737 AGCCTTGATGGTTTTTCTACCACGACCTTCCCTTTCATATTTTTCGTACAACTCAACAAA 433796 Query 48131 TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATC 48190 || || ||||| | | | || || ||| |||||| ||| | | ||||| ||| Sbjct 433797 CTCGTCACCATAAGTGTCAGCCAATCCTGGAGCTTCATTTGGAGAGAACAATGTCCA--- 433853 Query 48191 CTCATCATTTTTT---ACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAA 48247 |||| |||||| | ||||| ||||||| | |||||| ||||| | ||| ||||| Sbjct 433854 CTCACCATTTTGTTCAACTCTCTTCATAAACAAATCTGGGATCCACAAGGCTGGGAATAA 433913 Query 48248 ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTAT 48307 ||| |||| ||| | |||||| || || ||| || | | |||| || || | || Sbjct 433914 ATCTCTAGCTCTGATTTCTTCCTTACCGTGGTTCTTTCTGATCTCAATGAAATCAAAGAT 433973 Query 48308 ATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTG 48367 |||| ||||||||||| | ||| | || | ||||||||| || ||||| ||||| Sbjct 433974 ATCACTGTGCCATGGTTCAAGATACAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTG 434033 Query 48368 ATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATAT 48427 ||| | ||| | |||||| ||||| |||| | | ||| |||| ||||||||| || | Sbjct 434034 ATCAACATAACGGGCAGTGTTGTTGAAAACACGAACCATAGGGATAATACCATTAGAAGT 434093 Query 48428 ACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTA 48486 ||| || || || | ||||||| ||| | | | || ||| ||| || || ||| | Sbjct 434094 ACCGTTTGTACCAGCAATATAAGCACCAGTGGAACGAATGTTATGAATGTGCAA-ACCAA 434152 Query 48487 TACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTA 48546 ||||||| || | || || |||| |||||| || | || |||||||| ||||| | Sbjct 434153 TACCACCAGCACTCTTTGAAATTAAAGCACAAGTCTTTAAAGTGTCATAAATACCTTCAA 434212 Query 48547 TACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTG 48606 || ||| ||| |||| | | |||||| |||||||| || | ||| || | Sbjct 434213 TAGAATCTTCTTTCATTGCAACCAAGAAACAAGATGACATTTGTGGTTTTGGAGTACCAG 434272 Query 48607 AATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTT 48666 ||||||||| ||||| |||| |||| || | | || | ||| ||||| |||| Sbjct 434273 CATTAAATAAACAAGGAGAACCATGGGTAAAGTATCTTTGCGACATCAAGTTATAAGTTT 434332 Query 48667 CAATAACAGAATCT----ATATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722 |||| || ||| ||||||| | ||||||||| |||| || | ||| | || | Sbjct 434333 CAAT----GACTCTTGGGATATCCCTTCCATGTATACCGATAGCAACTCTCATAATCAAA 434388 Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782 | ||| ||||||||| | | ||| ||| || || | ||||||| |||| || ||| Sbjct 434389 TGTTGTGGTCTTTCAGCTACTTTACCATTGATACGTAACAAATATGATCTTTCTAAAGTT 434448 Query 48783 TTAAAACC 48790 || ||||| Sbjct 434449 TTGAAACC 434456 >seq35 Length=214301 Score = 113 bits (124), Expect = 5e-20 Identities = 185/261 (71%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 48180 AATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCT 48239 || |||||||| || | ||| ||||| ||| || | |||||| ||||| | | | Sbjct 164966 AACGACCAATCATCTCCTGATTTCACTCTTTGCATGAACAAATCTGGAATCCATA-ACCC 164908 Query 48240 ATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCC---ACTATTCCTTTTAAGTTCAAG 48295 ||| || ||||| ||||||| |||||||||||||| | | ||||| || ||||| Sbjct 164907 ATAGAACAAATCTCTAGTTCGAAGTTCTTCATTGCCGTGATTTTTCCTCATA--TTCAA- 164851 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || ||| | || ||||||||||| ||||| | ||| ||||| | | | ||||||| ||| Sbjct 164850 AATGTCAAAGATGTCAGCATGCCAAGGTTCCATATAGATTGCAAATGCTCCTGGTCTTTT 164791 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || ||||| || | ||||| || || ||||| |||| | ||||| || || | Sbjct 164790 TCCTCCGCCTTGGTCAACATATCGTGCGGTGTTGTTGAAAACGCGCAACATGGGAACTAC 164731 Query 48416 ACCATTTGATATACCATTGGT 48436 ||| ||| | ||||| || Sbjct 164730 CCCACCAGATCTCCCATTAGT 164710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107816309600