Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq69 275 9e-69 seq41 122 1e-22 seq54 120 4e-22 >seq69 Length=709337 Score = 275 bits (304), Expect = 9e-69 Identities = 587/863 (68%), Gaps = 36/863 (4%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| || || ||| | || || |||||||| ||||| || |||| || || Sbjct 558776 AGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTCCCAGCCAAGGAAAT 558717 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTA----ATT 17975 | |||||||||||||||||||||| || ||| ||||| ||||| | Sbjct 558716 GTTTTCCATAAAATCAAATGGATTAGTGACATTGTAAACTTTTT----TATTACCCAAAG 558661 Query 17976 CGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATAC 18035 | ||||||||||| || ||||||||||||||||| |||| || | |||||||||| Sbjct 558660 CAACCAATAATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATAC 558601 Query 18036 CTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | | || || | |||| ||||||| ||| |||||||| || || ||||||| || Sbjct 558600 CCAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAG 558541 Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGT-GATTATAATATAAT 18154 | || || || || ||| || | | | | || ||| || | | ||||| Sbjct 558540 TAATAATTCTTTCAAC----GATCTTTGGATCTGGTCTATGTTGTAAATGAGCAAATAAT 558485 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| || |||||||||||||||||||| || | | ||||||||||| || ||| Sbjct 558484 AAACATGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTT 558425 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGA---AACTACTAGAA 18271 || || ||||| | ||||||||| || | ||| || || ||||| | ||| ||| ||| Sbjct 558424 AATCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACT-GAA 558366 Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTAT 18329 | || ||||| ||||| ||| ||||| || | ||||| |||||||| | || | Sbjct 558365 A--AAGATACCTTCAACAGCA-GCGAAAGCAACCAATCTCTCAGCAAACAATGCCTCGGA 558309 Query 18330 TGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 || | |||||| | ||||| || | | || ||| || | || | Sbjct 558308 ATCT-TGGATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTTCAA 558250 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 ||||||| || ||| || |||||| | ||| || || ||||| || || || || | Sbjct 558249 TAGCATTGAATAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAATCAATAACG 558190 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 | || |||| || || ||| ||||||| || || || | || || ||| |||| | Sbjct 558189 AGTAAGTTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTT 558130 Query 18510 CGGGATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | ||| ||||| || ||| |||| |||| ||||| || |||||||| ||||| || Sbjct 558129 CTGGAATTTGAACTTCAGCT-GAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCG 558071 Query 18569 GCAGATGCGAAAAATGCCAAAACATATT----TAATGAAATGTTTTTCATTATCCTTGAG 18624 | | || || || ||||| | | || ||| |||| | ||||||||| || | Sbjct 558070 GATGCGGCAAAGAAAGCCAAGA-TTCTTCCGATAAAGAAACG---TTCATTATCGTTTAA 558015 Query 18625 ATTGT---TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 || | |||| |||| | |||||| || ||| | |||||| | |||||| || || Sbjct 558014 TTTTTCTCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGA 557955 Query 18682 TGATTCGGCCTGTTTGTACATTT 18704 | || |||| |||||||||| Sbjct 557954 AGCCTCAGCCTTCTTGTACATTT 557932 >seq41 Length=287713 Score = 122 bits (134), Expect = 1e-22 Identities = 195/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 155777 AAACaataaagtatttattgtttataataaa-aatttatgtaataa-aatgcaaatattt 155834 || ||||||| |||| || | | | | || ||||||| ||| | ||||||||| || Sbjct 12992 AATCAATAAA-TATTAATAGATCAGAGTATTCAATTTATTAAATCACAATGCAAATTTTC 13050 Query 155835 attaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTA 155894 | ||||| || || || || || || || || ||||| ||| ||| || | |||| Sbjct 13051 GTCAAAACTTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCCGACACTATTGAC 13110 Query 155895 AACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATT 155954 || || || ||| || || || |||||||| || || ||||| |||||||||||||| Sbjct 13111 AATGTCAAGTCTAAGATCCAGGACAAAGAAGGTATTCCACCAGACCAACAAAGATTGATC 13170 Query 155955 TATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAG 156014 | ||| ||||| || | ||||| |||||| |||| || || || || ||||| Sbjct 13171 TTTGCTGGTAAACAATTAGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAAGAA 13230 Query 156015 GCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || | || || ||||| ||||| ||||| ||| Sbjct 13231 TCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 13266 >seq54 Length=356724 Score = 120 bits (132), Expect = 4e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 155820 aaaatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || ||||||| | || || ||||| || || || ||||| || Sbjct 21658 AAAATGCAAATTTTCGTTAAAACCCTTACGGGTAAAACCATCACTTTGGAAGTTGAGTCA 21717 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| || || ||| || || ||||| || ||||| || |||||||| Sbjct 21718 TCTGACACCATTGACAATGTTAAATCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGAT 21777 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||| || | |||||| ||||| ||||| || || Sbjct 21778 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCTTATCCGACTAC 21837 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| || | || | || || || || ||||| ||||| |||| Sbjct 21838 AACAT-TCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGGTG 21889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870719224000