Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19]
140 sequences; 13,271,996 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq69 275 9e-69
seq41 122 1e-22
seq54 120 4e-22
>seq69
Length=709337
Score = 275 bits (304), Expect = 9e-69
Identities = 587/863 (68%), Gaps = 36/863 (4%)
Strand=Plus/Minus
Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919
|||||||| || || ||| | || || |||||||| ||||| || |||| || ||
Sbjct 558776 AGCTTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTCCCAGCCAAGGAAAT 558717
Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTA----ATT 17975
| |||||||||||||||||||||| || ||| ||||| ||||| |
Sbjct 558716 GTTTTCCATAAAATCAAATGGATTAGTGACATTGTAAACTTTTT----TATTACCCAAAG 558661
Query 17976 CGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATAC 18035
| ||||||||||| || ||||||||||||||||| |||| || | ||||||||||
Sbjct 558660 CAACCAATAATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATAC 558601
Query 18036 CTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095
| | || || | |||| ||||||| ||| |||||||| || || ||||||| ||
Sbjct 558600 CCAATAAACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAG 558541
Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGT-GATTATAATATAAT 18154
| || || || || ||| || | | | | || ||| || | | |||||
Sbjct 558540 TAATAATTCTTTCAAC----GATCTTTGGATCTGGTCTATGTTGTAAATGAGCAAATAAT 558485
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
||||| || |||||||||||||||||||| || | | ||||||||||| || |||
Sbjct 558484 AAACATGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTT 558425
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGA---AACTACTAGAA 18271
|| || ||||| | ||||||||| || | ||| || || ||||| | ||| ||| |||
Sbjct 558424 AATCCTGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACT-GAA 558366
Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTAT 18329
| || ||||| ||||| ||| ||||| || | ||||| |||||||| | || |
Sbjct 558365 A--AAGATACCTTCAACAGCA-GCGAAAGCAACCAATCTCTCAGCAAACAATGCCTCGGA 558309
Query 18330 TGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389
|| | |||||| | ||||| || | | || ||| || | || |
Sbjct 558308 ATCT-TGGATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTTCAA 558250
Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449
||||||| || ||| || |||||| | ||| || || ||||| || || || || |
Sbjct 558249 TAGCATTGAATAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAATCAATAACG 558190
Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509
| || |||| || || ||| ||||||| || || || | || || ||| |||| |
Sbjct 558189 AGTAAGTTTCTGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTT 558130
Query 18510 CGGGATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568
| ||| ||||| || ||| |||| |||| ||||| || |||||||| ||||| ||
Sbjct 558129 CTGGAATTTGAACTTCAGCT-GAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCG 558071
Query 18569 GCAGATGCGAAAAATGCCAAAACATATT----TAATGAAATGTTTTTCATTATCCTTGAG 18624
| | || || || ||||| | | || ||| |||| | ||||||||| || |
Sbjct 558070 GATGCGGCAAAGAAAGCCAAGA-TTCTTCCGATAAAGAAACG---TTCATTATCGTTTAA 558015
Query 18625 ATTGT---TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681
|| | |||| |||| | |||||| || ||| | |||||| | |||||| || ||
Sbjct 558014 TTTTTCTCTCCAATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGA 557955
Query 18682 TGATTCGGCCTGTTTGTACATTT 18704
| || |||| ||||||||||
Sbjct 557954 AGCCTCAGCCTTCTTGTACATTT 557932
>seq41
Length=287713
Score = 122 bits (134), Expect = 1e-22
Identities = 195/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 155777 AAACaataaagtatttattgtttataataaa-aatttatgtaataa-aatgcaaatattt 155834
|| ||||||| |||| || | | | | || ||||||| ||| | ||||||||| ||
Sbjct 12992 AATCAATAAA-TATTAATAGATCAGAGTATTCAATTTATTAAATCACAATGCAAATTTTC 13050
Query 155835 attaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTA 155894
| ||||| || || || || || || || || ||||| ||| ||| || | ||||
Sbjct 13051 GTCAAAACTTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCCGACACTATTGAC 13110
Query 155895 AACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATT 155954
|| || || ||| || || || |||||||| || || ||||| ||||||||||||||
Sbjct 13111 AATGTCAAGTCTAAGATCCAGGACAAAGAAGGTATTCCACCAGACCAACAAAGATTGATC 13170
Query 155955 TATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAG 156014
| ||| ||||| || | ||||| |||||| |||| || || || || |||||
Sbjct 13171 TTTGCTGGTAAACAATTAGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAAGAA 13230
Query 156015 GCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| || | || || ||||| ||||| ||||| |||
Sbjct 13231 TCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 13266
>seq54
Length=356724
Score = 120 bits (132), Expect = 4e-22
Identities = 168/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 155820 aaaatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
||||||||||| || ||||||| | || || ||||| || || || ||||| ||
Sbjct 21658 AAAATGCAAATTTTCGTTAAAACCCTTACGGGTAAAACCATCACTTTGGAAGTTGAGTCA 21717
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||| | ||| || || ||| || || ||||| || ||||| || ||||||||
Sbjct 21718 TCTGACACCATTGACAATGTTAAATCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGAT 21777
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||||||||||| | ||| ||||| || | |||||| ||||| ||||| || ||
Sbjct 21778 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCTTATCCGACTAC 21837
Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
|| || || ||| || | || | || || || || ||||| ||||| ||||
Sbjct 21838 AACAT-TCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGGTG 21889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731870719224000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |