Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq69 257 3e-63 seq54 150 4e-31 seq41 143 5e-29 >seq69 Length=709337 Score = 257 bits (284), Expect = 3e-63 Identities = 535/793 (67%), Gaps = 26/793 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAATA 49650 |||||||||||||||||| || ||| ||| ||||| | || | | | || |||| Sbjct 558710 CATAAAATCAAATGGATTAGTGACATTGTAAACTTTTT-TATTACCCAAAGCAACCAATA 558652 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 ||||||| || |||||||| |||||||| ||||||||| |||||||||||||||||| Sbjct 558651 ATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATACCCAATAAAC 558592 Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770 ||| |||||| |||||| || ||||||||||| ||||| ||||||| |||| || Sbjct 558591 TAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAATAAT-- 558534 Query 49771 taattatattattttttga--taatttatatttaatatgattcgcatatattaaACATGC 49828 | || | || ||| || | | ||| || | |||| ||| ||| ||||||||| Sbjct 558533 TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAATGA---GCAAATAATAAACATGC 558477 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 |||||||| |||||||| ||||| | | | || ||||| || |||||||||||||| Sbjct 558476 GAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCCTGG 558417 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAATAT 49945 ||| || ||||| || || | ||| || || ||||||| ||| ||| |||| || || Sbjct 558416 CATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACT-GAAA--AAGAT 558360 Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATAT 50005 ||| || ||| || || || | | ||| | |||||| | | |||| || Sbjct 558359 ACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAATGCCTCGGAATCTTGGAT 558300 Query 50006 CCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065 ||| | || |||||||| || || ||||| || || || |||| ||||| || || Sbjct 558299 CCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTTCAATAGCATTGAA 558240 Query 50066 TAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTC 50125 ||| | ||| | || ||||| || || |||| Sbjct 558239 TAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAATCAATAACGAGTAAGTTTC 558180 Query 50126 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG 50185 || || | |||||| ||||| ||| || || | | ||||||| | || Sbjct 558179 TGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAATTTG 558120 Query 50186 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245 |||||| | | || ||| || || || ||| ||||||||||| ||||| || || Sbjct 558119 AACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCGGATGCGGCAAA 558060 Query 50246 GAATGCTAAAACGTATT----TAATAAAATGTTTTTCATTATCTTTTAAATTTTC---CC 50298 ||| || || | | || ||| ||| | ||||||||| ||||| ||||| || Sbjct 558059 GAAAGCCAAGA-TTCTTCCGATAAAGAAACG---TTCATTATCGTTTAATTTTTCTCTCC 558004 Query 50299 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATT 50358 || | |||||| || |||||| | |||||| |||||| ||||| || | | | Sbjct 558003 AATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTCAGCCT 557944 Query 50359 TTTTATACATTTG 50371 | || |||||||| Sbjct 557943 TCTTGTACATTTG 557931 >seq54 Length=356724 Score = 150 bits (166), Expect = 4e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| | | || || || || ||||| | || ||| || || || || || | Sbjct 21888 ACCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGA-ATGTTGTAGTCGG 21830 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| |||| | |||| ||||||||||||||||||||||| ||||| |||||||| || | Sbjct 21829 ATAAGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAG 21770 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || ||||| || || ||| ||||| || | || || || || | Sbjct 21769 GGATTCCTTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATGGTGTCAGATGACTCAA 21710 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| | ||| ||||||||||| || | ||||||| || || |||||||| Sbjct 21709 CTTCCAAAGTGATGGTTTTACCCGTAAGGGTTTTAACGAAAATTTGCATTTT 21658 >seq41 Length=287713 Score = 143 bits (158), Expect = 5e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| | | || || || || ||||||| ||||| ||| || || || Sbjct 13269 AAAACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTC 13210 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||| |||| | || || |||||||||||||||||||| ||||| ||||| || || Sbjct 13209 AGATAGAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGG 13150 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||| || || || ||| || ||||| |||| || || ||||| Sbjct 13149 TGGAATACCTTCTTTGTCCTGGATCTTAGACTTGACATTGTCAATAGTGTCGGAAGATTC 13090 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || ||||| ||||| ||||| ||||| | || || |||||| Sbjct 13089 AACTTCCAAGGTGATGGTCTTACCGGTTAAAGTTTTGACGAAAATTTGCATT 13038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478234089000