Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19]
140 sequences; 13,271,996 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq69 257 3e-63
seq54 150 4e-31
seq41 143 5e-29
>seq69
Length=709337
Score = 257 bits (284), Expect = 3e-63
Identities = 535/793 (67%), Gaps = 26/793 (3%)
Strand=Plus/Minus
Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAATA 49650
|||||||||||||||||| || ||| ||| ||||| | || | | | || ||||
Sbjct 558710 CATAAAATCAAATGGATTAGTGACATTGTAAACTTTTT-TATTACCCAAAGCAACCAATA 558652
Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710
||||||| || |||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 558651 ATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATACCCAATAAAC 558592
Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770
||| |||||| |||||| || ||||||||||| ||||| ||||||| |||| ||
Sbjct 558591 TAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAATAAT-- 558534
Query 49771 taattatattattttttga--taatttatatttaatatgattcgcatatattaaACATGC 49828
| || | || ||| || | | ||| || | |||| ||| ||| |||||||||
Sbjct 558533 TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAATGA---GCAAATAATAAACATGC 558477
Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888
|||||||| |||||||| ||||| | | | || ||||| || ||||||||||||||
Sbjct 558476 GAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCCTGG 558417
Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAATAT 49945
||| || ||||| || || | ||| || || ||||||| ||| ||| |||| || ||
Sbjct 558416 CATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACT-GAAA--AAGAT 558360
Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATAT 50005
||| || ||| || || || | | ||| | |||||| | | |||| ||
Sbjct 558359 ACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAATGCCTCGGAATCTTGGAT 558300
Query 50006 CCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065
||| | || |||||||| || || ||||| || || || |||| ||||| || ||
Sbjct 558299 CCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTTCAATAGCATTGAA 558240
Query 50066 TAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTC 50125
||| | ||| | || ||||| || || ||||
Sbjct 558239 TAAAAAGTCAGCTTCTTTTGGATCCTTGATGTAAGTTTCAATCAATAACGAGTAAGTTTC 558180
Query 50126 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG 50185
|| || | |||||| ||||| ||| || || | | ||||||| | ||
Sbjct 558179 TGAGTGAATGTTTTCCATCATAATTTGGAATCCGTAGAAAGATTTAGCTTCTGGAATTTG 558120
Query 50186 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245
|||||| | | || ||| || || || ||| ||||||||||| ||||| || ||
Sbjct 558119 AACTTCAGCTGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCGGATGCGGCAAA 558060
Query 50246 GAATGCTAAAACGTATT----TAATAAAATGTTTTTCATTATCTTTTAAATTTTC---CC 50298
||| || || | | || ||| ||| | ||||||||| ||||| ||||| ||
Sbjct 558059 GAAAGCCAAGA-TTCTTCCGATAAAGAAACG---TTCATTATCGTTTAATTTTTCTCTCC 558004
Query 50299 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATT 50358
|| | |||||| || |||||| | |||||| |||||| ||||| || | | |
Sbjct 558003 AATCATGAAGATCTTTACCTAAATCGATTTCTTCAGCTGTCCAGAATGAAGCCTCAGCCT 557944
Query 50359 TTTTATACATTTG 50371
| || ||||||||
Sbjct 557943 TCTTGTACATTTG 557931
>seq54
Length=356724
Score = 150 bits (166), Expect = 4e-31
Identities = 174/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
||||||||| | | || || || || ||||| | || ||| || || || || || |
Sbjct 21888 ACCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGA-ATGTTGTAGTCGG 21830
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
|||| |||| | |||| ||||||||||||||||||||||| ||||| |||||||| || |
Sbjct 21829 ATAAGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAG 21770
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| || ||||| || || ||| ||||| || | || || || || |
Sbjct 21769 GGATTCCTTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATGGTGTCAGATGACTCAA 21710
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|||| | ||| ||||||||||| || | ||||||| || || ||||||||
Sbjct 21709 CTTCCAAAGTGATGGTTTTACCCGTAAGGGTTTTAACGAAAATTTGCATTTT 21658
>seq41
Length=287713
Score = 143 bits (158), Expect = 5e-29
Identities = 171/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365
|| ||||||||| | | || || || || ||||||| ||||| ||| || || ||
Sbjct 13269 AAAACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTC 13210
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||||| |||| | || || |||||||||||||||||||| ||||| ||||| || ||
Sbjct 13209 AGATAGAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGG 13150
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
||| || |||||||| || || || ||| || ||||| |||| || || |||||
Sbjct 13149 TGGAATACCTTCTTTGTCCTGGATCTTAGACTTGACATTGTCAATAGTGTCGGAAGATTC 13090
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || ||||| ||||| ||||| ||||| | || || ||||||
Sbjct 13089 AACTTCCAAGGTGATGGTCTTACCGGTTAAAGTTTTGACGAAAATTTGCATT 13038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984478234089000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |