Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq69 268 2e-66 seq41 152 9e-32 seq54 147 4e-30 >seq69 Length=709337 Score = 268 bits (296), Expect = 2e-66 Identities = 392/546 (72%), Gaps = 15/546 (3%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || ||||||||| | ||||| || || || || || || | || || || Sbjct 558773 TTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTCCCAGCCAAGGAAATGTT 558714 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATA 38949 | |||||||||||||||||| || ||| ||| ||||| | || | | | || | Sbjct 558713 TTCCATAAAATCAAATGGATTAGTGACATTGTAAACTTTTT-TATTACCCAAAGCAACCA 558655 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 |||||||||| || |||||||| |||||||| ||||||||| ||||||||||||||||| Sbjct 558654 ATAATCTATCAGCAACAAATTCGACATATTGACACATTAATTTACAATTCATACCCAATA 558595 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | ||| |||||| |||||| || ||||||||||| ||||| ||||||| |||| | Sbjct 558594 AACTAACTGGTAAAGCATCAGTAAAGAATTCTTTTTCAATTTCAACAGCTTCAGTAATAA 558535 Query 39070 tcataattatattattttttga--taatttatatttaatatgattcgcatataGTAAACA 39127 | | || | || ||| || | | ||| || | |||| ||| ||| |||||| Sbjct 558534 T--TCTTTCAACGATCTTTGGATCTGGTCTATGTTGTAAATGA---GCAAATAATAAACA 558480 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||| ||||| || |||||||||||||| | | | || ||||| || ||||||||||| Sbjct 558479 TGCGAAATCAGTGTGTAAACCTTCGTCACGACAAATTAATTCGTTGGAGAAAGTTAATCC 558420 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAA 39244 |||||| || ||||| || || | ||| || || ||||||| ||| ||| |||| || Sbjct 558419 TGGCATCAAACCTCTTTTCTTCAACCAGAAAATAGATGCAAATGAACCACT-GAAA--AA 558363 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 39304 ||||| || ||| || || || | | ||| | |||||| | | |||| Sbjct 558362 GATACCTTCAACAGCAGCGAAAGCAACCAATCTCTCAGCAAACAATGCCTCGGAATCTTG 558303 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 ||||| | ||||||||||| || || ||||| || || || |||| ||||| || Sbjct 558302 GATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGCGGAATGGTTTCAATAGCATT 558243 Query 39365 AAATAA 39370 ||||| Sbjct 558242 GAATAA 558237 >seq41 Length=287713 Score = 152 bits (168), Expect = 9e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || || || || || ||||||| ||||| || || || || Sbjct 13269 AAAACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTC 13210 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 |||| || || |||| || ||||||||||||||||| || ||||| |||||||| || Sbjct 13209 AGATAGAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGG 13150 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || |||||||| || || || ||| || ||||| ||||| || || ||||| Sbjct 13149 TGGAATACCTTCTTTGTCCTGGATCTTAGACTTGACATTGTCAATAGTGTCGGAAGATTC 13090 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || ||||| ||||| ||||| ||||| | ||| || |||||| Sbjct 13089 AACTTCCAAGGTGATGGTCTTACCGGTTAAAGTTTTGACGAAAATTTGCATT 13038 >seq54 Length=356724 Score = 147 bits (162), Expect = 4e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || ||||| | || || ||| || Sbjct 21896 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGAATGTTG 21837 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || ||||| | || | | || |||||||||||||||||||| || ||||| ||||| Sbjct 21836 TAGTCGGATAAGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGA 21777 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || || || |||||||| || ||||| || || ||| ||||| || || || || Sbjct 21776 TCTGGAGGGATTCCTTCCTTGTCTTGGATCTTGGATTTAACATTGTCAATGGTGTCAGAT 21717 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| | ||| ||||||||||| || | ||||||| ||| || |||||||| Sbjct 21716 GACTCAACTTCCAAAGTGATGGTTTTACCCGTAAGGGTTTTAACGAAAATTTGCATTTT 21658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134416012000