Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq69 224 2e-53 seq35 161 2e-34 seq7 125 2e-23 seq27 109 1e-18 >seq69 Length=709337 Score = 224 bits (248), Expect = 2e-53 Identities = 572/858 (67%), Gaps = 13/858 (2%) Strand=Plus/Minus Query 110310 GGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGT 110369 |||||||||||| | ||| | | ||||| | ||| ||||||| | | |||| | Sbjct 434456 GGTTTCAAAACTTTAGAAAGATCATATTTGTTACGTATCAATGGTAAAGTAGCTGAAAGA 434397 Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429 || ||||| || || | | ||||| || ||||| |||||| ||||| | || Sbjct 434396 CCACAACATTTGATTATGAGAGTTGCTATCGGTATACATGGAAGGGATATCCCAAGAGTC 434337 Query 110430 ATTGAATGTTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATT 110488 |||||| |||| | | || | ||| | | || |||| | ||||| |||| Sbjct 434336 ATTGAAACTTATAACTTGATGTCGCAAAGATACTT-TACCCATGGTTCTCCTTGTTTATT 434278 Query 110489 TAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAACGATG 110547 ||| || || ||| | |||| || | ||||| |||||| | | ||| || || | Sbjct 434277 TAATGCTGGTACTCCAAAACCACAAATGTCATCTTG-TTTCTTGGTTGCAATGAAAGAAG 434219 Query 110548 ATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAACTCT 110606 |||||||||||||||||||||| || ||||||| |||| | ||||| || | || Sbjct 434218 ATTCTATTGAAGGTATTTATGACACT-TTAAAGACTTGTGCTTTAATTTCAAAGAGTGCT 434160 Query 110607 GGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCG 110666 || || |||||| | ||| ||||| | ||||| || | || || |||| || | Sbjct 434159 GGTGGTATTGGTTTGCACATTCATAACATTCGTTCCACTGGTGCTTATATTGCTGGTACA 434100 Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || ||| |||| | ||| || | || ||| | | || |||||| ||||||| ||| Sbjct 434099 AACGGTACTTCTAATGGTATTATCCCTATGGTTCGTGTTTTCAACAACACTGCCCGTTAT 434040 Query 110727 GTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || ||||||||||| |||||| || | |||||| | ||||| ||||| ||||| Sbjct 434039 GTTGATCAAGGTGGTAACAAGAGACCAGGTGCTTTTGCTTTGTATCTTGAACCATGGCAC 433980 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 ||||| ||||| ||| | || | | || || || || |||||| ||||| Sbjct 433979 AGTGATATCTTTGATTTCATTGAGATCAGAAAGAACCACGGTAAGGAAGAAATCAGAGCT 433920 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 | |||||||| || ||||||| ||||||| || ||||| | ||| || ||||| Sbjct 433919 AGAGATTTATTCCCAGCCTTGTGGATCCCAGATTTGTTTATGAAGAGAGTTGAACAAAAT 433860 Query 110904 GGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAA 110963 || |||| | | | | ||| || |||| || | |||| ||||| | Sbjct 433859 GGTGAGTGGACATTGTTCTCTCCAAATGAAGCTCCAGGATTGGCTGACACTTATGGTGAC 433800 Query 110964 GAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAATTCC 111022 ||||||| || | |||||||||||||||| ||||| | | | |||| | || Sbjct 433799 GAGTTTGTTGAGTTGTACGAAAAATATGAAAGGGAAGGTCGTGGTAGAAAAACCA--TCA 433742 Query 111023 A-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATA 111081 | |||||| | | |||| | ||| | ||| | ||| |||||||| || || | | Sbjct 433741 AGGCTCAAAAGTTGTGGTACTCCATCTTGGAAGCTCAAACCGAAACTGGTACCCCATTCA 433682 Query 111082 TTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGT 111141 | |||||||| ||| | ||| ||| || || |||| ||||||||| | || || | Sbjct 433681 TGTTGTATAAGGATGCTTGTAACACCAAGTCCAACCAAAAGAATTTAGGTATTATCAAAT 433622 Query 111142 CTAGTAATTTGTGCTGTG 111159 || || ||||| |||| Sbjct 433621 CTTCCAACTTGTGTTGTG 433604 Score = 129 bits (142), Expect = 1e-24 Identities = 481/735 (65%), Gaps = 33/735 (4%) Strand=Plus/Plus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 ||||| ||||| ||| || | |||||||| | |||||| |||||| | |||||| Sbjct 557934 ATGTACAAGAAGGCTGAGGCTTCATTCTGGACAGCTGAAGAAATCGATTTAGGTAAAGAT 557993 Query 131525 ATTGATGATTGG---GAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGT-TCT 131580 || |||||||| |||||||||| | |||||| | || | | || ||| ||| Sbjct 557994 CTTCATGATTGGAGAGAAAAATTAAACGATAATGAAC--GTTTCTTTATCGGAAGAATCT 558051 Query 131581 TG-CATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTC 131639 || | ||||| |||| | ||||| ||||||| |||||| | || || || ||| Sbjct 558052 TGGCTTTCTTTGCCGCATCCGATGGTATTGTTAATGAAAACTTGGTGGAAAACTT--TTC 558109 Query 131640 AA--GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATC 131697 | ||| || | ||||| |||| | ||| |||||| ||| ||| | ||| Sbjct 558110 AGCTGAAGTTCAAATTCCAGAAGCTAAATCTTTCTACGGATTCCAAATTATGATGGAAAA 558169 Query 131698 TATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATG---AAGATGA 131754 ||||| || | || || ||||||||||| | | | || || |||| | Sbjct 558170 CATTCACTCAGAAACTTACTCGTTATTGATTGAAACTTACATCAAGGATCCAAAAGAAGC 558229 Query 131755 TAAAAATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATG 131814 | | | ||||| ||||| | | | |||| |||||||||||| || || || Sbjct 558230 TGACTTT---TTATTCAATGCTATTGAAACCATTCCGCAAATTAAAAAGAAGGCTGATTG 558286 Query 131815 GGCTATTAAATGGATTCAAGATGATTCCGCTA-ATTTTT--CTACAAGACTTGTAGCTTT 131871 ||| || | |||||| |||||| |||| ||| || || ||| | || ||||| Sbjct 558287 GGCCATCAGATGGATCCAAGAT---TCCGAGGCATTGTTTGCTGAGAGATTGGTTGCTTT 558343 Query 131872 TGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTG---CTATCTTTTGGCTTAA 131928 ||| |||||||||||| | |||||| ||| || | || |||| || ||| | || Sbjct 558344 CGCTGCTGTTGAAGGTATCT--TTTTCA-GTGGTTCATTTGCATCTATTTTCTGGTTGAA 558400 Query 131929 GAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGC 131988 ||| | || |||||||| ||| | | || ||||| |||| || | | || |||| Sbjct 558401 GAAAAGAGGTTTGATGCCAGGATTAACTTTCTCCAACGAATTAATTTGTCGTGACGAAGG 558460 Query 131989 ATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGC-TGATAAACTTGATGAAA 132047 || || ||||| || || || || || | | |||| | ||| || ||| || Sbjct 558461 TTTACACACTGATTTCGC-ATGTTTATTATTTGCTCATTTACAACATAGACCAGATCCAA 558519 Query 132048 ATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAG 132107 | | || || | |||| | ||||| ||||| || || || || || |||| || | Sbjct 558520 AGATCGTTGAAAGAATTATTACTGAAGCTGTTGAAATTGAAAAAGAATTCTTTACTGATG 558579 Query 132108 CTTTGCCTTGCAATTTGATTGGG-ATGAATGCTGACTCTATGAAGGAGTACATTGAATTC 132166 |||| || | | || |||||| |||||| | | | ||| | || | ||||| Sbjct 558580 CTTTACC-AGTTAGTTTATTGGGTATGAATTGTAAATTAATGTGTCAATATGTCGAATTT 558638 Query 132167 GTTGCTGATCGTTTA 132181 ||||||||| | ||| Sbjct 558639 GTTGCTGATAGATTA 558653 >seq35 Length=214301 Score = 161 bits (178), Expect = 2e-34 Identities = 436/654 (67%), Gaps = 25/654 (4%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTT-CTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAA 110578 ||||| |||||| |||| ||| || |||||||| ||||| || || ||| | | ||| | Sbjct 164566 TCTTG-TTTCTTGCTAGCAATGAAGGATGATTCCATTGATGGAATCTATCAAACACTTCA 164624 Query 110579 AGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCG 110638 ||| | || | ||||| ||| ||||| || ||||| || || |||| |||| | Sbjct 164625 CGAAGCAGCCTTGATTTCCAAAGCTTCTGGTGGGATTGGGATCCATATTCACAATATCAG 164684 Query 110639 CTCAAAAGGA--GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATG 110696 | ||||| ||| || | | | | | ||| | | | ||| | ||||| ||| Sbjct 164685 AGCGCAAGGATCGCACAT-TAGTAGTACTAATGGGAGAT-CTGGTGGGGTAGTTCCCATG 164742 Query 110697 TTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGC 110753 || | || |||||| |||| ||| |||||| | ||||| || || ||| || Sbjct 164743 TTGCGCGTTTTCAACAACACCGCACGATATGTTGACCAAGGCGGAGGAAAAAGACCAGGA 164802 Query 110754 TCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGT 110813 ||||||| |||||| | |||||||||||| | || || ||||| | || | | | Sbjct 164803 GCATTTGCAATCTATATGGAACCTTGGCATGCTGACATCTTTGACATTTTGAATATGAGG 164862 Query 110814 AAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCA 110873 |||||||| || |||||||| || | | ||||| || |||| | |||||| || Sbjct 164863 AAAAATCACGGCAATGAAGAACTTCGAACTAGAGATTTGTTCTATGGGTTATGGATTCCA 164922 Query 110874 GATTTATTCATGAAACGTGTTCA---AGAAAATGGCATGTGGTCTCTTATGTGTCCTCAT 110930 ||||| |||||| || | || | || | ||| || ||||| | | | ||| || Sbjct 164923 GATTTGTTCATGCAAAGAGTGAAATCAGGAGATG--AT-TGGTCGTTATTCTCTCCCGAT 164979 Query 110931 CGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATAT 110990 | ||||| | |||||| ||||| | ||||| | | | ||||| |||||| Sbjct 164980 ATCGCACCTGGGTTGAGTGATGTTTATGGCAGCGAGTTCGTTAAAATGTACGAGAAATAT 165039 Query 110991 GAAA---AAGAA--GGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAA 111045 |||| ||| | ||| | | || || ||| ||| ||| |||||||||| || Sbjct 165040 GAAACTCAAGGATTGGC-ATCTGCGACAATAAA----AGCCCAAAAACTTTGGTTAGCAA 165094 Query 111046 TCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATC 111105 | | || |||||| ||| || ||| ||| || || ||||||||||| ||||| Sbjct 165095 TTTTGGAGTCACAAACTGAGACAGGAGGTCCGTACATGTTGTATAAAGACGCCTGTAATC 165154 Query 111106 GCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 ||| |||| || ||| |||||||||| ||||| || || ||||||| Sbjct 165155 AAAAAACTAACCAGTCCAATCTAGGAACAATCAAGTCCTCAAACTTATGCTGTG 165208 >seq7 Length=328414 Score = 125 bits (138), Expect = 2e-23 Identities = 399/618 (65%), Gaps = 47/618 (8%) Strand=Plus/Minus Query 167248 CACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307 ||||||||||||| |||||| ||||||||| |||||||||| |||||| |||| || Sbjct 267537 CACCAGCATTATCAAATTCACCACAATAATTTGGAGCTGAAAATAAAGTAACCAATTGAC 267478 Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAAGTTCAA 167367 | ||| || ||||||||||||||||||||||||| ||| ||||| |||| || || Sbjct 267477 GTTTGCTGAAAAATTCATAACCATCTTCAACAACTTGATGAGCACG----ACAAATTAAA 267422 Query 167368 CTCCTAt--ttttttAAGAAAATTAGTTAAAGCACGTAA--TCCAAATTTATAACTACAA 167423 | ||| | |||| |||| | ||| || | | ||||| || || | | Sbjct 267421 TCCATATCATGTTTTTGCAAAAAACGCGAAACAACATCAGGACCAAAAGTAAAAGAAACA 267362 Query 167424 CCTCTTTCAGATTCAGAATAATAATCAATATCATGCGATGGATCCGCCCAAAGAAGATCG 167483 || | ||| |||||| || | |||||| | ||||| | ||| | | ||| Sbjct 267361 CCACGATCATTTTCAGACCAACCAGTAATATCTTTATCAGGATCTGACCATAACAAATCA 267302 Query 167484 CATACCAACCCCTTATCAGGGATATCAATAGGTTTTTTAATCCTATTGATATCTTCTAAT 167543 || | ||||| |||||| |||||| | || ||| ||| | || | ||| | | Sbjct 267301 CACAATAACCCAACATCAGGAATATCAGTTGGACGCATAACCCTCCTAATTTGTTCCATT 267242 Query 167544 TTATTAATATCTTCAGTG--ATTCCACCATGAACACAAAAAGCCAATGGATTATCAATTG 167601 ||| | ||| | ||| | ||||||||| |||| | ||| Sbjct 267241 GAATTCAAATC--CGGTGACAATCCACCATG-------------CATGG----TGAATAT 267201 Query 167602 TTATTC--CAATGGTTGCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCA 167659 || ||| |||| | |||||||||| | | | |||| ||| | ||| ||||||| Sbjct 267200 TTTTTCATCAATAATAGCAGCAATAGGTAAACAATTAAAACAATCAGTAAAAGTTTTCCA 267141 Query 167660 GATTTTTATCGAACCACGTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATC 167719 | ||| || | | |||||| |||||||| ||||| ||||| | ||| Sbjct 267140 AAGTTTAATATTATATCTTCGTTTACATTCATCATAAAACCCATAAATACGGTTGATTGA 267081 Query 167720 AGCACATTCGTGATTTCCTCT-----TAATAAAATTAT---GTTATTTNNNNNNNNNNNN 167771 ||||||||| ||||| ||||| ||| |||||| | | ||||| Sbjct 267080 AGCACATTCATGATTACCTCTAAGGATAAAAAAATTTTCCGGATATTT--------GATC 267029 Query 167772 NTGTAGCAAAATAATAACAAAATTGTTTCTAATGATTTAACACCTCTATCAACATAATCA 167831 |||| ||||| | |||| || || || || ||||||||||||||||||| Sbjct 267028 TTGTAAGCTAATAAAAGACAAATGGTCTCCAAACTTTGTTTACCTCTATCAACATAATCA 266969 Query 167832 CCTAAAAATATATATTTA 167849 || | ||||| ||| ||| Sbjct 266968 CCAAGAAATAAATAGTTA 266951 >seq27 Length=151770 Score = 109 bits (120), Expect = 1e-18 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| ||| | ||| ||| | ||||| | ||||| || |||||||||||||| Sbjct 14472 CATTTGATGGACGACGATCCAGTTTTATTCAACCGTCAACCTTCGTTGCATAAAATGTCT 14413 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG 305426 |||||||| |||| ||| || || | || | ||||| |||| || ||| ||| Sbjct 14412 ATGATGGCGCATAGAGTTAAGGTTATGCCTTATTCTACATTCAGATTGAACTTGTCAGT- 14354 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | ||||||||||||| ||||| ||||| || || |||||| |||||||||| |||| Sbjct 14353 -TACCTCGCCTTATAATGCAGATTTCGATGGTGACGAGATGAATTTGCATGTACCACAAT 14295 Query 305487 C 305487 | Sbjct 14294 C 14294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810671154540