Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq69 293 3e-74 seq70 96.9 4e-15 seq54 91.5 2e-13 seq60 87.8 2e-12 >seq69 Length=709337 Score = 293 bits (324), Expect = 3e-74 Identities = 845/1289 (66%), Gaps = 31/1289 (2%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||||||||| | |||||||||||||| |||||||| |||||||| ||||| Sbjct 433002 TCTTCTGGAGTAGATGTTCGAAGTGTATGGTTCAAAACATTCATTGTTACCCAAAATTTG 433061 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 || ||||| || ||||||||||| |||| ||| | | ||| | | ||| | | Sbjct 433062 TGATGTGGAAGCGGTTGGCATTGGAGCCACCAACAAAGAGTTTCTCATACCATGTTTGGC 433121 Query 110818 GATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATG 110875 | || || | ||||||| || || || | | |||| ||||||| | Sbjct 433122 AAGTTTTTGTTTCAATTCATCCCAATCCCATAATTCTGTAGGCTTTCTG--TCCCACAAG 433179 Query 110876 TCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG 110935 ||| | || | || |||||||| || || || || | |||||||||| | ||||| Sbjct 433180 TCATATTGTAACAAACCTTGGGATGCTGGTGATCCTTGGTAGGTTTCATAAGGACCTTCT 433239 Query 110936 GCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995 ||| ||||||||| || || | | |||||||| || ||||| || || || Sbjct 433240 TCTTGTGCCAATTCAATAGAAGCTTCAACAGCAGCGTGATAGATAGTTTCGAAAATTTGA 433299 Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCC 111055 || | || | ||||| | ||||| ||| || | | | || || |||| Sbjct 433300 ATGTTTAATTCTCTAGCTTCTTGGGAATCGAATCCGATTCTTAAAACCATGAAGGCATCA 433359 Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 111115 || | |||||| || ||||| |||| |||||||||| ||| ||||| || | ||| Sbjct 433360 GCCAAACCTTGGACTCCCAATGCAATTGGTCTGTGTCTCATGTTAGATTT---CTCAGCT 433416 Query 111116 TCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 ||| || || ||| |||| ||||| ||||||| ||| | || ||||||| || Sbjct 433417 TCAGGGACTGGGTAATAATTCCTGTCTATGACTCTGTTCAAGTTACGAGTAACAACTTTG 433476 Query 111173 GTGATTTCATGAAGTTTTTCATAAT-----CAAAAGTGCGAGTC-TCTTCATTGACATAC 111226 || | ||||| | || ||| | | ||| ||| | |||| | | | || Sbjct 433477 GTAACATCATGCAACTTGTCAAAGTTGTACCAAGCGTGTTTACCATCTTGTTCAATAAAC 433536 Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 || | || || |||||||| || || ||||| || || | ||| ||| || Sbjct 433537 GAAGGTAAAGCAATCGATGCCAAGTTACAGACAGCAACTTCGTCTGGAGCTGAGTATTCG 433596 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | |||||| ||| ||||||||| || || | || |||||||||||||| ||| Sbjct 433597 ACAATTTCACAACACAAGTTGGAAGATTTGATAATACCTAAATTCTTTTGGTTGGACTTG 433656 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||| || |||||||| || | |||| | || || || || || || || | || | Sbjct 433657 GTGTTACAAGCATCCTTATACAACATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAG 433716 Query 111407 ATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGG---CCCGTCCCTCCGCCTC 111462 || | | ||| ||| | | | || | |||| || | || || ||| || Sbjct 433717 ATGGAGTACCACAACTTTTGAGCCTTG----ATGGTTTTTCTACCACGACCTTCCCTTTC 433772 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 || ||| ||| | | ||||||| ||||| | ||| | | ||||| || | Sbjct 433773 ATATTTTTCGTACAACTCAACAAACTCGTCACCATAAGTGTCAGCCAATCCTGGAGCTTC 433832 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 | |||| |||| | | ||| | |||| || ||||| | |||||| || | ||||| Sbjct 433833 ATTTGGAGAGAACAATGTCCACTCACCATTTTGTTCAACTCTCTTCATAAACAAATCTGG 433892 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 ||||||| || || || | ||||||| | | || ||||| | ||| ||||| || Sbjct 433893 GATCCACAAGGCTGGGAATAAATCTCTAGCTCTGATT-TCTTCCTTACCGTGGTTCTTTC 433951 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | ||||| ||| || | |||||| ||||||||| |||||||| | || | || | Sbjct 433952 TGATCTCAATGAAATCAAAGATATCACTGTGCCATGGTTCAAGATACAAAGCAAAAGCAC 434011 Query 111702 C----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 | || | | || | |||||| ||||| || || ||| ||| || || |||| | Sbjct 434012 CTGGTCTCTTGTTACC-ACCTTGATCAACATAACGGGCAGTGTTGTTGAAAACACGAACC 434070 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || || |||||||||| || ||| ||||| || |||| || | ||| | Sbjct 434071 ATAGGGATAATACCATTAGAAGTACCGTTTGTACCAGCAATATAAGCACCAGTGGAACGA 434130 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | ||| ||||||| |||||||| ||||| | |||||| ||| ||||| | | Sbjct 434131 ATGTTATGAATGTGCAAACCAATACCACCAGCACTCTTTGAAATTAAAGCACAAGTCTTT 434190 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 | ||| |||| ||||| | || || || || || | || | | ||| ||| ||| Sbjct 434191 AAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAAGAAACAAGATGAC 434250 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 || || ||| |||| ||||||||||| || Sbjct 434251 ATTTGTGGTTTTGGAGTACCAGCATTAAA 434279 >seq70 Length=247326 Score = 96.9 bits (106), Expect = 4e-15 Identities = 280/425 (66%), Gaps = 11/425 (3%) Strand=Plus/Plus Query 11535 TGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG 11594 ||||||| || ||||| || | ||||||||| | ||| |||||||||||| || | Sbjct 28286 TGTCAAACCCGTCCATTTCAACCAATAATTGATTCAATGTAGTTTCTCTCTCATCGTTGG 28345 Query 11595 C-----TGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAA 11649 | | |||| | | | | |||||| || | |||||||| ||||||| || Sbjct 28346 CGCCTGTTGCATTTCCCTTTGAT--CTTTGCTTACCAATTGCATCAATTTCATCAACAAA 28403 Query 11650 GACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 ||||| |||| |||||| | || ||| || | ||| || || | | |||||| Sbjct 28404 CACAATCGATGGAGCATTTTCTCTTGCAGTTTTGAACAAATCACGTACACGTGAGGCACC 28463 Query 11710 CACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGAT-GAATGGGACATTTG 11768 |||||||||||||| || ||||| | | |||| || | || || || ||| | Sbjct 28464 TACACCAACAAACATTTCAACAAATTCCGAACCAGA-AACAGAATAAAACGGAACACCAG 28522 Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828 |||||| || ||||| ||||| | || || || || || || ||| | |||| Sbjct 28523 CTTCACCAGCTGTGGCTTTAGCGAGTAATGTTTTACCTGTTCCCGGAGGACCTGAAAGAA 28582 Query 11829 GGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAAT 11888 || || || ||||| || |||||| | |||| | ||||| | ||| |||| Sbjct 28583 TAGCACCGCGAGGGATTTTTGCACCAAGTTTTTCATATTTTTCGGGAT-TTTGCAAAAAG 28641 Query 11889 C-CACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAAGCGG 11947 | ||||| ||| | ||| | ||| ||| | | || || ||||||| |||| | Sbjct 28642 CTCACAAACTCGGTGACTTCTTGTTTTGCCTCCGCCATACCTGCAACATCCTTGAACTTG 28701 Query 11948 GTTTT 11952 ||||| Sbjct 28702 GTTTT 28706 >seq54 Length=356724 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 181775 ttttGTGAAGATATACCTCGTTTGAGAAGCGTCTTTACCACCCATGAGACGC----GTAC 181830 || ||| |||||||| |||| || ||| ||||||||||| || ||| | || Sbjct 256983 TTCTGTAAAGATATATCTCGCAGCAGCAGCATCTTTACCACC----AGTCGCTCTTGAAC 256928 Query 181831 CAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCA 181890 | || |||| ||||| | || ||| ||||||||||| || | ||| | |||| Sbjct 256927 CGAAAGCACCATTTGGCTTCAAAATGTTGATGTTGTTTGATCCGACAAAGTTTTGTGCCA 256868 Query 181891 ACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAA 181950 | || ||| || | | | | || |||||||| || ||||| ||| || || | Sbjct 256867 AACCAATGATTGTTTGCACTAATGAGACTTCACCATGATGGTATCCTGTGTTTTCACTTA 256808 Query 181951 CATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAAGCAAGCAT 182010 ||||||| ||||| || ||||| || |||||| ||| | ||| | | ||| ||| || Sbjct 256807 CATATGCTGCCAATTGCGCCACTTTGATTTCACTTTTCAAGTTTCTCTTGAAACAACCAA 256748 Query 182011 ACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| || || || || ||||| | |||||| Sbjct 256747 ACAAAACCTTTCTTTGACCTGGCTTCAAACCATC 256714 >seq60 Length=402545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| ||||| || ||||| || ||||| ||||| || ||||| ||| | ||||| Sbjct 120767 TATGGACGTGTAGCTCCACGTTCAGGTCTTGCTGTCAAACATGGAATTTCAACCGGTGCT 120708 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 || || |||||| | || || |||||||| ||||| || | || ||||| ||| Sbjct 120707 GGGGTAATTGATGCTGATTACCGGGGTGAAGTTAAAGTTGTCTTGTTTAATCATTCAGAT 120648 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAA 164783 ||| | ||||| | || || || ||| | || || ||| | || | || | || | Sbjct 120647 AAACATTTTGAAATTAAAAAGGGAGATAGAATTGCTCAATTAGTTTTGGAAAGAATTGTA 120588 Query 164784 ACACCCGATGTGGAGGAAATTGGTGT-----TCTTG-AAGAGACGGAGAGAGGTGCGGGT 164837 | | ||| |||||||||||| | | ||| | | || || | |||| || Sbjct 120587 AATGCTGATTTGGAGGAAATTGATTTGGAAGGATTGTCAAATACTGAACGTGGTGAAGGA 120528 Query 164838 GGATTTGGATCTACTGGT 164855 ||||||||||| |||||| Sbjct 120527 GGATTTGGATCGACTGGT 120510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030900944000