Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20orthopsilosis_20[genbank_20GCA_5F900002835.1_202014-02-19] 140 sequences; 13,271,996 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq41 158 3e-33 seq54 147 5e-30 seq123 95.1 3e-14 seq58 93.3 1e-13 >seq41 Length=287713 Score = 158 bits (174), Expect = 3e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | ||| ||||||||||||| ||||| || | | |||||| || Sbjct 13254 TCTCAACACCAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGATAGAGTTCTACC 13195 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || ||||| ||||| | || ||||||||| || ||||||||||| || Sbjct 13194 GTCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTT 13135 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| ||| || || ||||| || | ||| || || || ||||| Sbjct 13134 GTCCTGGATCTTAGACTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTGAT 13075 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || |||||||| | ||| | ||||||| Sbjct 13074 GGTCTTACCGGTTAAAGTTTTGACGAAAATTTGCATT 13038 >seq54 Length=356724 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||||||||| ||||| | ||||| |||| || ||||| || Sbjct 21876 TCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCGGATAAGGTTCTTCC 21817 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | || |||||| || || || || |||||||| Sbjct 21816 ATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGGATTCCTTCCTT 21757 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| || ||| || |||||||| || | || || || || ||||| Sbjct 21756 GTCTTGGATCTTGGATTTAACATTGTCAATGGTGTCAGATGACTCAACTTCCAAAGTGAT 21697 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| | ||||| | ||| | ||||||||| Sbjct 21696 GGTTTTACCCGTAAGGGTTTTAACGAAAATTTGCATTTT 21658 >seq123 Length=21916 Score = 95.1 bits (104), Expect = 3e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 7492 TCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGC 7551 ||| | ||||| || ||||||||| ||| || ||| ||| | || || || | Sbjct 13266 TCTGTTATTATTAGATTAGAATTATCTGGACCTGGTGATCAGTTCTTACATGAAAACCGT 13207 Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || ||| | |||| | ||||| | | |||||||||||| || |||||| Sbjct 13206 CAAGTTTATAATGTTTTAGTTACTGGACATGCTATAGCTATGATTTTCTTATTCGTTATG 13147 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || || | || || | || || || | ||| | ||| | ||||||||||| ||| Sbjct 13146 CCTGTATTAATTGGTGCCTTTGGTAACTTCTTCTTACCTATCATGATTGGTGCAGTAGAT 13087 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTT 7728 ||||| ||| | || | || || || ||||| |||| |||| ||| | ||| || Sbjct 13086 ATGGCATTTGCTAGATTAAATAACATTAGTTTCTGATGTTTACCTCCTGCATTAGTT 13030 >seq58 Length=253217 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || || ||||||||||| |||||||| Sbjct 230404 GAAAATTTGACCATCAGTAATGGAAATAACATTGGTTGGAATATAAGCAGAGACATCACC 230463 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 |||| ||||| | | || || || || | ||| ||||| ||| Sbjct 230464 ACCTTGGGTTTCAATGATTGGCAAAGCAGTCAATGAACCACCGCCA 230509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529060897160