Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000182765.2_202011-10-26] 9 sequences; 13,030,174 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5 145 1e-29 seq3 134 2e-26 seq4 100 4e-16 >seq5 Length=2091826 Score = 145 bits (160), Expect = 1e-29 Identities = 210/294 (71%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || || || || || ||||| ||||| || Sbjct 2075674 ATGCAAATTTTCGTCAAAACATTGACTGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075615 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| ||||||||||| ||||| |||||| Sbjct 2075614 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075555 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || |||||||| || ||| || |||| || || || || Sbjct 2075554 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075495 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT-- 124776 |||||||||||||| || || || ||||| || | || |||||||| || || ||| Sbjct 2075494 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGTTTTTAAGATTTA 2075435 Query 124777 CATAAAAATTGATTGTAAATAAATATCACTACAAATAATTTTATCTGTTATTTT 124830 |||||| || || || | ||||| || | || || | ||| | |||||| Sbjct 2075434 GATAAAAGTTAATAGTCTACTAATATATCTTCTAACAA-TGTATTTTCTATTTT 2075382 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || || || || || ||||| ||||| || Sbjct 2075902 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075843 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| ||||||||||| ||||| |||||| Sbjct 2075842 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075783 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || |||||||| || ||| || |||| || || || || Sbjct 2075782 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075723 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| || ||||| ||||| || | || |||||||||| ||| || Sbjct 2075722 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 2075665 Score = 141 bits (156), Expect = 1e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | || ||| | || || || || || || ||||| |||| || Sbjct 2076133 ACAATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCA 2076074 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| || | ||| || || ||||| ||||||||||| ||||| ||| Sbjct 2076073 TCAGACACTATTGACAACGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGAT 2076014 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| || |||||||| || ||| || |||| || || || Sbjct 2076013 CAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTAC 2075954 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || |||||||||||||| || ||||| ||||| || | || |||||||||| ||| | Sbjct 2075953 AACATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATT 2075894 Query 124776 T 124776 | Sbjct 2075893 T 2075893 >seq3 Length=962442 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || ||||| || ||| |||| |||| || Sbjct 22340 AATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGAGTCATC 22399 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || ||||| || ||||| ||||| Sbjct 22400 TGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 22459 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || |||||||| || ||| || |||| || || || || Sbjct 22460 ACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 22519 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||||| |||||||| ||||| || | || |||||||| |||||| Sbjct 22520 CATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTGGTAAAAA 22576 >seq4 Length=3023470 Score = 100 bits (110), Expect = 4e-16 Identities = 198/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatA 205677 || ||||| |||| | || || ||||| | || ||| |||||| || || || Sbjct 1390777 GGGTTCCAAGCTGACATGATGATTCTTCTATCATATGGATTAGTTTTTAACTTCTTAATT 1390836 Query 205678 ATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTA 205737 | || | || |||||||| ||||| ||||| | ||||| ||| |||||| | Sbjct 1390837 ACATCTTGCAACTGATCAAAACCTTGGCCAGTATAGTCAGTATCGCAATCTTTATATTCA 1390896 Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCA 205797 ||||||||||| | ||||||||| ||||||||||| || ||||||||||| | || Sbjct 1390897 GCACCAAAATGCCTCCATTGAAACCCATAAACTGGTCCCAAATCACCTTCACGACGATGG 1390956 Query 205798 TTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcct 205857 | || ||| | || | || | ||| | ||||| | ||||| || | | |||| Sbjct 1390957 GTCAATCCAAGATTGTCTAAAAATTCTCGCAGACCATTGCCCTCCCATATTTTAACTCCT 1391016 Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910 || | | | || || | || || ||||||| |||||||| || | ||| Sbjct 1391017 TTTTCACTCAAGATTTTGGCATCCGTGGATCCAGCAATAAACCACAAGAGTTC 1391069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455915011200