Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000182765.2_202011-10-26] 9 sequences; 13,030,174 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 134 1e-26 seq3 118 8e-22 >seq5 Length=2091826 Score = 134 bits (148), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 2075922 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075981 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 2075982 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2076041 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | ||| || | ||||||| | | Sbjct 2076042 ATCTTGGAT--TTGACGTTGTCAATAGTGTCTGATGACTCAACCTCTAAGGTGATGGTCT 2076099 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||||| || |||||||||||| Sbjct 2076100 TACCGGTCAATGTTTTGACGAAAATTTGCATT 2076131 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 2075694 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075753 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 2075754 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075813 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | || || | ||||||| | | Sbjct 2075814 ATCTTGGAT--TTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCT 2075871 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||||||||||||| || ||||||||||| Sbjct 2075872 TACCGGTCAATGTTTTGACGAAAATTTGCAT 2075902 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 2075466 ACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075525 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 2075526 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075585 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | || || | ||||||| | | Sbjct 2075586 ATCTTGGAT--TTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCT 2075643 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||||||||| || ||||||||||| Sbjct 2075644 TACCAGTCAATGTTTTGACGAAAATTTGCAT 2075674 >seq3 Length=962442 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 22549 ACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 22490 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || ||| |||| | |||||||||||| || | |||||||| || Sbjct 22489 AATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 22430 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| | ||| ||| | |||||| |||| Sbjct 22429 ATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAACTTCTAAAGTGATGGTTTTA 22370 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || || | ||||| ||||| ||||||||| || Sbjct 22369 CCCGTAAGGGTTTTGACAAAGATTTGCATTCTT 22337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343958390705