Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000182765.2_202011-10-26] 9 sequences; 13,030,174 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3 149 5e-31 seq5 140 3e-28 >seq3 Length=962442 Score = 149 bits (164), Expect = 5e-31 Identities = 174/234 (74%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 28548 GTAAA-AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 ||||| ||||||||| ||||| ||||| | |||||||||||||| || ||| || Sbjct 22334 GTAAAGAATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGA 22393 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 | || || || | | | || ||||| || ||| ||||| || ||| | || Sbjct 22394 GTCATCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACC 22453 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||||||||| ||| | |||||||| || ||||||||||||||| || |||| || |||| Sbjct 22454 AGATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGA 22513 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||| ||||| ||||||||| ||||| |||| || ||||| |||| || Sbjct 22514 CTACAACATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGG 22567 >seq5 Length=2091826 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| || ||||| ||||| ||| || ||| | ||| Sbjct 2075902 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075843 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || |||| || ||| |||||||| || | || ||||||| Sbjct 2075842 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075783 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| || ||||||||||||||| || |||| || |||| || ||| Sbjct 2075782 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075723 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| || ||||| |||| || ||||| |||| || || Sbjct 2075722 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTAT 2075673 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| || ||||| ||||| ||| || ||| | ||| Sbjct 2075674 ATGCAAATTTTCGTCAAAACATTGACTGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075615 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || |||| || ||| |||||||| || | || ||||||| Sbjct 2075614 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075555 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| || ||||||||||||||| || |||| || |||| || ||| Sbjct 2075554 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075495 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||||||| || | ||| |||| || ||||| |||| || Sbjct 2075494 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGG 2075448 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || |||||||| || ||||| ||||| ||| || || | || Sbjct 2076131 AATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCATC 2076072 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | |||| || ||| |||||||| || | || |||||| Sbjct 2076071 AGACACTATTGACAACGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 2076012 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || ||||||||||||||| || |||| || |||| || || Sbjct 2076011 ACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 2075952 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||| || ||||| |||| || ||||| |||| || || Sbjct 2075951 CATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTAT 2075901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404753338411