Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000182765.2_202011-10-26] 9 sequences; 13,030,174 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4 271 1e-67 seq5 165 1e-35 seq3 134 2e-26 >seq4 Length=3023470 Score = 271 bits (300), Expect = 1e-67 Identities = 593/893 (66%), Gaps = 24/893 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||||||||| ||||||| || || || || || || | || || || Sbjct 2626928 TTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGATATTC 2626869 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAA 38950 | |||||||||||||||||| || ||| ||| ||||| | || | | | || || Sbjct 2626868 TCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTT-TGTTACCCAAAGCAACCAA 2626810 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 |||||| ||||| ||||||||||||||||| |||| || | ||||||||| ||||| || Sbjct 2626809 TAATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAA 2626750 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 ||| ||| ||||||||| || ||||||||||| ||||| || |||| |||| || Sbjct 2626749 ACTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAAT 2626690 Query 39071 cataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAACAT 39128 | || | || ||| | | | | ||| || | |||| ||| | | || ||| Sbjct 2626689 TCT--TTCAACAATCTTTGGGTCAGGTCTATGTTGTAAATGA---GCAAACAACAAGCAT 2626635 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| || ||||||||||| || | | | || |||||||| ||| || |||||| Sbjct 2626634 GCAAAATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCT 2626575 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA---CTACTAGAAAAGAAT 39245 ||||||||||||||||| || | ||| || || || ||||| | ||| |||||| Sbjct 2626574 GGCATTAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACTGAAAAAGA-- 2626517 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCT 39302 ||||||| ||| ||||| || | | ||| | |||||| || ||| |||| Sbjct 2626516 -TACCCTCAACAGCAGCAAAAGCAACCAATCTCTCAGCAAACA---ATGCATCGGAATCT 2626461 Query 39303 AAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 39362 |||||| | ||||||||||| || || ||||| || ||| || |||| ||||| Sbjct 2626460 TGAATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCA 2626401 Query 39363 TTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATAC 39422 || ||||| || ||||| Sbjct 2626400 TTGAATAAGAAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAA 2626341 Query 39423 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 |||| ||||| | |||||| ||||| || ||||||| | ||||| | | Sbjct 2626340 GTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGA 2626281 Query 39483 TACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 39542 |||||||| | | | || ||| || || || ||| |||||||||||||| || Sbjct 2626280 ATTTGAACTTCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCA 2626221 Query 39543 GCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC---C 39599 ||||| || || || | | ||| ||| ||||||| || || || || || | Sbjct 2626220 GCGAAAAAGGCCAAGATTCTTCCAATGAAAAACCTTTCATTGTCATTCAATTTCTCTCTC 2626161 Query 39600 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 ||| | |||||| || |||||| | ||||||| ||||| || |||||| | | Sbjct 2626160 CAATCATGAAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCC 2626101 Query 39660 TTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCG 39712 || || |||||||| | || ||| | | ||| ||||| | ||||| || Sbjct 2626100 TTCTTGTACATTTGCCAAATTTCATGGTATCTAATAGGAAACATGACATAACG 2626048 >seq5 Length=2091826 Score = 165 bits (182), Expect = 1e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || || || || ||||| || | ||||| ||| || || || Sbjct 2075444 AAAACCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTC 2075503 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || |||| || | || ||||||||||||||||||||||| ||||| ||||| || || Sbjct 2075504 GGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGG 2075563 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || |||||||| ||||| || || ||| ||||| ||||| ||||| ||||| Sbjct 2075564 TGGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTC 2075623 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || ||||| |||||||| |||||||| | ||| || ||||| Sbjct 2075624 AACCTCTAAGGTGATGGTCTTACCAGTCAATGTTTTGACGAAAATTTGCAT 2075674 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || || || | ||||| ||| || || || Sbjct 2075673 ATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCG 2075732 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || ||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 2075733 GACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 2075792 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| ||||| ||||| ||||| Sbjct 2075793 GGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCA 2075852 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || ||||| ||||| || |||||||| | ||| || ||||| Sbjct 2075853 ACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075902 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || || || | ||||| ||| || || || Sbjct 2075901 ATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCG 2075960 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || ||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 2075961 GACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 2076020 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| || || ||||| ||||| || || Sbjct 2076021 GGAATACCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATAGTGTCTGATGACTCA 2076080 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||| || ||||| ||||| || |||||||| | ||| || |||||| Sbjct 2076081 ACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCATT 2076131 >seq3 Length=962442 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || || || || ||||||| || || || || || || || Sbjct 22568 ACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGA 22509 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||||||||||||||||||| || ||||| ||||| || ||||| Sbjct 22508 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGG 22449 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || ||||| || || || ||||| || || || || || || || Sbjct 22448 GATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAAC 22389 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||| ||||||||||| || | ||||| | || || |||||| Sbjct 22388 TTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCATT 22340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135898172200