Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000182765.2_202011-10-26] 9 sequences; 13,030,174 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq3 123 5e-23 >seq5 Length=2091826 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||||| ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 2075466 ACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075525 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 2075526 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075585 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| || | || |||||||| || | ||| || || | ||||| |||||| Sbjct 2075586 ATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCTTA 2075645 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| || ||||| Sbjct 2075646 CCAGTCAATGTTTTGACGAAAATTTGCAT 2075674 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 2075922 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075981 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 2075982 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2076041 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| ||| | || |||||||| || | || || || | ||||| |||||| Sbjct 2076042 ATCTTGGATTTGACGTTGTCAATAGTGTCTGATGACTCAACCTCTAAGGTGATGGTCTTA 2076101 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || ||||| || |||||| Sbjct 2076102 CCGGTCAATGTTTTGACGAAAATTTGCATT 2076131 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 2075694 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075753 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 2075754 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075813 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| || | || |||||||| || | ||| || || | ||||| |||||| Sbjct 2075814 ATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCTTA 2075873 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| || ||||| Sbjct 2075874 CCGGTCAATGTTTTGACGAAAATTTGCAT 2075902 >seq3 Length=962442 Score = 123 bits (136), Expect = 5e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||| | | || | ||||| || | |||||| || ||||| Sbjct 22532 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAA 22473 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||| || || || || ||||||||||||||||| | || || | Sbjct 22472 GATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATT 22413 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | || ||||| | |||||| || |||||||| | || || || Sbjct 22412 GTCAATGGTGTCAGATGACTCAACTTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGAC 22353 Query 283088 GAATATCTGCATT 283100 || || |||||| Sbjct 22352 AAAGATTTGCATT 22340 Score = 93.3 bits (102), Expect = 9e-14 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| ||||| | ||||| || |||| || ||||||| || || || ||||||||| Sbjct 409542 GGGAAACCTTCAACTTGACCATTGGCAATGGCTCTCATCAAGGTGGATTTACCAGCACCA 409601 Query 317089 TTGGGGCCGCAAAGACCATA---CCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTC 317145 || || || || | |||||| | |||| |||| | |||| |||| |||||| Sbjct 409602 TTTGGACCACACAAACCATATCTTCTGTTTC---TCTTTAATCTAAATTGGGTCTTGTTC 409658 Query 317146 AGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 | | ||||| ||||||| |||| ||||||||||| | ||||| ||| || || Sbjct 409659 AACAAGATCTTGGCACCATAAGCCAACGAGAACTCACAGTTACACAAGTCTTCACC 409714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739079297886