Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000182765.2_202011-10-26] 9 sequences; 13,030,174 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq5 89.7 4e-13 >seq3 Length=962442 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||| ||||||||||| ||| | || ||||||||||||||||| |||| Sbjct 22567 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 22508 Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| | | || |||| || || || ||||||||||| | || ||||||| | Sbjct 22507 AAAGTT--CTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTG 22450 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | |||||||| || ||||| ||| || ||| | |||||||| | || || Sbjct 22449 GGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGT--CAATGGTGTCAGATGACTC 22392 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || || || || ||||| ||||| || || ||||||||||| Sbjct 22391 AACTTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 22341 >seq5 Length=2091826 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/238 (69%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| ||| | ||| || ||||| |||||||| Sbjct 2075669 TTGCATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTA 2075728 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| |||| | | || |||| || || || ||||| ||||| | || ||| Sbjct 2075729 GTCGGACAAAGTT--CTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGA 2075786 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279 |||| || | |||||| || || ||||| || || ||| | || ||||| | Sbjct 2075787 TCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGT--CAATAGTGTCTG 2075844 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | || || ||||| || || | || || ||||| |||||||| Sbjct 2075845 ATGATTCAACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075902 Score = 87.8 bits (96), Expect = 1e-12 Identities = 169/244 (69%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| ||| | ||| || ||||| |||||||| Sbjct 2075897 TTGCATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTA 2075956 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| |||| | | || |||| || || || ||||| ||||| | || ||| Sbjct 2075957 GTCGGACAAAGTT--CTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGA 2076014 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280 |||| || | |||||| || || ||||| | || | ||| | || ||||| | Sbjct 2076015 TCTGGTGGAATACCTTCTTTGTCTTGGATCTT-GGATTTGACGTTGTCAATAGTGTCTGA 2076073 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || || ||||| | || || ||||| || || | || || ||||| |||||||| | Sbjct 2076074 TGACTCAACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT--T 2076131 Query 44341 GTGA 44344 |||| Sbjct 2076132 GTGA 2076135 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168 || ||||||| ||||||||||| ||| | ||| || ||||| |||||||| |||| Sbjct 2075448 CCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 2075507 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 |||| | | || |||| || || || ||||| ||||| | || ||||||| | Sbjct 2075508 AAAGTT--CTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTG 2075565 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | |||||| || || ||||| || || ||| | || ||||| | ||||| Sbjct 2075566 GAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGT--CAATAGTGTCTGATGATTC 2075623 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || | || || ||||| |||||||| Sbjct 2075624 AACCTCTAAGGTGATGGTCTTACCAGTCAATGTTTTGACGAAAATTTGCAT 2075674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990360513553