Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq22 145 1e-29 seq3 134 2e-26 seq37 100 4e-16 >seq22 Length=92557 Score = 145 bits (160), Expect = 1e-29 Identities = 210/294 (71%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || || || || || ||||| ||||| || Sbjct 76998 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 76939 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| ||||||||||| ||||| |||||| Sbjct 76938 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 76879 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || |||||||| || ||| || |||| || || || || Sbjct 76878 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 76819 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT-- 124776 |||||||||||||| || || || ||||| || | || |||||||| || || ||| Sbjct 76818 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGTTTTTAAGATTTA 76759 Query 124777 CATAAAAATTGATTGTAAATAAATATCACTACAAATAATTTTATCTGTTATTTT 124830 |||||| || || || | ||||| || | || || | ||| | |||||| Sbjct 76758 GATAAAAGTTAATAGTCTACTAATATATCTTCTAACAA-TGTATTTTCTATTTT 76706 Score = 141 bits (156), Expect = 1e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | || ||| | || || || || || || ||||| |||| || Sbjct 77229 ACAATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCA 77170 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| || | ||| || || ||||| ||||||||||| ||||| ||| Sbjct 77169 TCAGACACTATTGACAACGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGAT 77110 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| || |||||||| || ||| || |||| || || || Sbjct 77109 CAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTAC 77050 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || |||||||||||||| || ||||| ||||| || | || |||||||||| ||| | Sbjct 77049 AACATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATT 76990 Query 124776 T 124776 | Sbjct 76989 T 76989 >seq3 Length=600384 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || ||||| || ||| |||| |||| || Sbjct 21812 AATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGAGTCATC 21871 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || ||||| || ||||| ||||| Sbjct 21872 TGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 21931 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || |||||||| || ||| || |||| || || || || Sbjct 21932 ACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 21991 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||||| |||||||| ||||| || | || |||||||| |||||| Sbjct 21992 CATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTGGTAAAAA 22048 >seq37 Length=3023111 Score = 100 bits (110), Expect = 4e-16 Identities = 198/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatA 205677 || ||||| |||| | || || ||||| | || ||| |||||| || || || Sbjct 1390584 GGGTTCCAAGCTGACATGATGATTCTTCTATCATATGGATTAGTTTTTAACTTCTTAATT 1390643 Query 205678 ATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTA 205737 | || | || |||||||| ||||| ||||| | ||||| ||| |||||| | Sbjct 1390644 ACATCTTGCAACTGATCAAAACCTTGGCCAGTATAGTCAGTATCGCAATCTTTATATTCA 1390703 Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCA 205797 ||||||||||| | ||||||||| ||||||||||| || ||||||||||| | || Sbjct 1390704 GCACCAAAATGCCTCCATTGAAACCCATAAACTGGTCCCAAATCACCTTCACGACGATGG 1390763 Query 205798 TTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcct 205857 | || ||| | || | || | ||| | ||||| | ||||| || | | |||| Sbjct 1390764 GTCAATCCAAGATTGTCTAAAAATTCTCGCAGACCATTGCCCTCCCATATTTTAACTCCT 1390823 Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910 || | | | || || | || || ||||||| |||||||| || | ||| Sbjct 1390824 TTTTCACTCAAGATTTTGGCATCCGTGGATCCAGCAATAAACCACAAGAGTTC 1390876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455650601600