Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05]
37 sequences; 13,050,082 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq22 145 1e-29
seq3 134 2e-26
seq37 100 4e-16
>seq22
Length=92557
Score = 145 bits (160), Expect = 1e-29
Identities = 210/294 (71%), Gaps = 3/294 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || ||| | || || || || || || ||||| ||||| ||
Sbjct 76998 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 76939
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| || || ||||| ||||||||||| ||||| ||||||
Sbjct 76938 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 76879
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | |||||||| || |||||||| || ||| || |||| || || || ||
Sbjct 76878 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 76819
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT-- 124776
|||||||||||||| || || || ||||| || | || |||||||| || || |||
Sbjct 76818 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGTTTTTAAGATTTA 76759
Query 124777 CATAAAAATTGATTGTAAATAAATATCACTACAAATAATTTTATCTGTTATTTT 124830
|||||| || || || | ||||| || | || || | ||| | ||||||
Sbjct 76758 GATAAAAGTTAATAGTCTACTAATATATCTTCTAACAA-TGTATTTTCTATTTT 76706
Score = 141 bits (156), Expect = 1e-28
Identities = 176/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
||||||||||| || | || ||| | || || || || || || ||||| |||| ||
Sbjct 77229 ACAATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCA 77170
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|| || ||| || | ||| || || ||||| ||||||||||| ||||| |||
Sbjct 77169 TCAGACACTATTGACAACGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGAT 77110
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||||| | |||||||| || |||||||| || ||| || |||| || || ||
Sbjct 77109 CAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTAC 77050
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775
|| |||||||||||||| || ||||| ||||| || | || |||||||||| ||| |
Sbjct 77049 AACATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATT 76990
Query 124776 T 124776
|
Sbjct 76989 T 76989
>seq3
Length=600384
Score = 134 bits (148), Expect = 2e-26
Identities = 172/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | || || || || || ||||| || ||| |||| |||| ||
Sbjct 21812 AATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGAGTCATC 21871
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || ||| ||| | || || || ||||| || ||||| || ||||| |||||
Sbjct 21872 TGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 21931
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||||| | || ||||| || |||||||| || ||| || |||| || || || ||
Sbjct 21932 ACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 21991
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| ||||| ||||| |||||||| ||||| || | || |||||||| ||||||
Sbjct 21992 CATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTGGTAAAAA 22048
>seq37
Length=3023111
Score = 100 bits (110), Expect = 4e-16
Identities = 198/293 (68%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatA 205677
|| ||||| |||| | || || ||||| | || ||| |||||| || || ||
Sbjct 1390584 GGGTTCCAAGCTGACATGATGATTCTTCTATCATATGGATTAGTTTTTAACTTCTTAATT 1390643
Query 205678 ATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTA 205737
| || | || |||||||| ||||| ||||| | ||||| ||| |||||| |
Sbjct 1390644 ACATCTTGCAACTGATCAAAACCTTGGCCAGTATAGTCAGTATCGCAATCTTTATATTCA 1390703
Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCA 205797
||||||||||| | ||||||||| ||||||||||| || ||||||||||| | ||
Sbjct 1390704 GCACCAAAATGCCTCCATTGAAACCCATAAACTGGTCCCAAATCACCTTCACGACGATGG 1390763
Query 205798 TTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcct 205857
| || ||| | || | || | ||| | ||||| | ||||| || | | ||||
Sbjct 1390764 GTCAATCCAAGATTGTCTAAAAATTCTCGCAGACCATTGCCCTCCCATATTTTAACTCCT 1390823
Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910
|| | | | || || | || || ||||||| |||||||| || | |||
Sbjct 1390824 TTTTCACTCAAGATTTTGGCATCCGTGGATCCAGCAATAAACCACAAGAGTTC 1390876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755455650601600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |