Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq22 87.8 1e-12 seq3 87.8 1e-12 >seq22 Length=92557 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||||| ||| || || ||||||||||||||| | Sbjct 77000 CCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 77059 Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | | || |||| |||||| || || || ||||| | ||||| || || | Sbjct 77060 AAAGTT--CTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTG 77117 Query 45228 GCACACCCTCCTTGTC 45243 | | ||| || ||||| Sbjct 77118 GAATACCTTCTTTGTC 77133 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||| | ||| || || ||||||||||||||| | Sbjct 76772 CCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 76831 Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | | || |||| |||||| || || || ||||| | ||||| || || | Sbjct 76832 AAAGTT--CTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTG 76889 Query 45228 GCACACCCTCCTTGTC 45243 | | ||| || ||||| Sbjct 76890 GAATACCTTCTTTGTC 76905 >seq3 Length=600384 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||||| || ||||| || |||||||||||| | Sbjct 22039 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 21980 Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | | || |||| |||||| || || || ||||| | ||||| || || | Sbjct 21979 AAAGTT--CTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTG 21922 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | || |||||||| || || ||| || | | | |||| ||| | Sbjct 21921 GGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAA 21862 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || | || || || || ||||| || || || |||||||||||||| Sbjct 21861 CTTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 21813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075021845777